Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H19
(847 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111545-1|AAI11546.1| 569|Homo sapiens mex-3 homolog B (C. ele... 165 2e-40
BC036211-1|AAH36211.1| 569|Homo sapiens MEX3B protein protein. 165 2e-40
AY950678-1|AAY34146.1| 569|Homo sapiens MEX3B protein. 165 2e-40
AK131424-1|BAD18571.1| 569|Homo sapiens protein ( Homo sapiens ... 165 2e-40
AY950680-1|AAY34148.1| 651|Homo sapiens MEX3D protein. 160 5e-39
AB107353-1|BAC67658.1| 515|Homo sapiens KIAA2031 protein protein. 160 5e-39
DQ225272-1|ABB04031.1| 165|Homo sapiens ring finger and KH doma... 159 9e-39
AY950677-1|AAY34145.1| 520|Homo sapiens MEX3A protein. 157 5e-38
AY950679-1|AAY34147.1| 659|Homo sapiens MEX3C protein. 156 8e-38
BC113384-1|AAI13385.1| 489|Homo sapiens MEX3D protein protein. 155 1e-37
DQ225273-1|ABB04032.1| 130|Homo sapiens ring finger and KH doma... 155 3e-37
BC113741-1|AAI13742.1| 488|Homo sapiens mex-3 homolog D (C. ele... 153 8e-37
AF458084-1|AAQ04763.1| 488|Homo sapiens bcl-2 ARE RNA binding p... 153 8e-37
AB095929-1|BAC23105.1| 501|Homo sapiens KIAA2009 protein protein. 110 7e-24
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 38 0.035
BC066938-1|AAH66938.1| 648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 38 0.035
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 38 0.035
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 38 0.035
BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein. 37 0.11
AK131375-1|BAD18526.1| 577|Homo sapiens protein ( Homo sapiens ... 37 0.11
AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens ... 37 0.11
AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear ... 36 0.14
AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear r... 36 0.14
AL589765-13|CAI17177.1| 561|Homo sapiens tudor and KH domain co... 36 0.24
AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH domain-con... 36 0.24
AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding pr... 36 0.24
AJ278110-1|CAB92442.1| 648|Homo sapiens DEAD-box protein protein. 35 0.32
X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulate... 33 0.99
S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear rib... 33 0.99
CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein. 33 0.99
BC017098-1|AAH17098.1| 360|Homo sapiens PCBP4 protein protein. 33 0.99
BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear r... 33 0.99
BC004153-1|AAH04153.1| 403|Homo sapiens poly(rC) binding protei... 33 0.99
BC003008-1|AAH03008.1| 403|Homo sapiens poly(rC) binding protei... 33 0.99
BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear r... 33 0.99
AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear ... 33 0.99
AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear ... 33 0.99
AK023993-1|BAB14761.1| 403|Homo sapiens protein ( Homo sapiens ... 33 0.99
AF257772-1|AAG02186.1| 424|Homo sapiens RNA binding protein MCG... 33 0.99
AF257771-1|AAG02185.1| 369|Homo sapiens RNA binding protein MCG... 33 0.99
AF257770-1|AAG02184.1| 424|Homo sapiens RNA binding protein MCG... 33 0.99
AF176330-1|AAG09241.1| 403|Homo sapiens alphaCP-4 protein. 33 0.99
AF141340-1|AAG49443.1| 276|Homo sapiens LYST-interacting protei... 33 0.99
AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear r... 33 1.7
AL607035-3|CAI15908.1| 403|Homo sapiens novel protein (CGI-18) ... 32 3.0
AL589765-14|CAI17175.1| 516|Homo sapiens tudor and KH domain co... 32 3.0
BC067878-1|AAH67878.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 31 4.0
BC051703-1|AAH51703.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 31 4.0
AY039237-1|AAK72102.1| 630|Homo sapiens DEAD-box protein CAGE p... 31 4.0
AL589765-15|CAI17176.1| 557|Homo sapiens tudor and KH domain co... 31 5.3
BC120960-1|AAI20961.1| 282|Homo sapiens keratin associated prot... 31 6.9
BC120959-1|AAI20960.1| 282|Homo sapiens keratin associated prot... 31 6.9
X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated chond... 30 9.2
BC128110-1|AAI28111.1| 327|Homo sapiens CSPG4 protein protein. 30 9.2
BC107118-1|AAI07119.2| 273|Homo sapiens hypothetical protein FL... 30 9.2
BC107117-1|AAI07118.2| 273|Homo sapiens hypothetical protein FL... 30 9.2
AY359468-1|AAQ62842.1| 2322|Homo sapiens melanoma chondroitin su... 30 9.2
AK002097-1|BAA92083.1| 273|Homo sapiens protein ( Homo sapiens ... 30 9.2
AB076347-1|BAD01534.1| 282|Homo sapiens keratin associated prot... 30 9.2
>BC111545-1|AAI11546.1| 569|Homo sapiens mex-3 homolog B (C.
elegans) protein.
Length = 569
Score = 165 bits (401), Expect = 2e-40
Identities = 91/129 (70%), Positives = 100/129 (77%), Gaps = 1/129 (0%)
Frame = +1
Query: 247 VEDQRAFKLALE-LSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEH 423
++DQRA +LAL+ LS+L L + AS P KKS NMTECVPVPSSEH
Sbjct: 28 LDDQRALQLALDQLSLLGLDSDEGASLYDSEP----------RKKSVNMTECVPVPSSEH 77
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSXI 603
VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAAEHFS I
Sbjct: 78 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMI 137
Query: 604 RASRKCGSA 630
RASR +A
Sbjct: 138 RASRNKNTA 146
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 172 VGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 221
>BC036211-1|AAH36211.1| 569|Homo sapiens MEX3B protein protein.
Length = 569
Score = 165 bits (401), Expect = 2e-40
Identities = 91/129 (70%), Positives = 100/129 (77%), Gaps = 1/129 (0%)
Frame = +1
Query: 247 VEDQRAFKLALE-LSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEH 423
++DQRA +LAL+ LS+L L + AS P KKS NMTECVPVPSSEH
Sbjct: 28 LDDQRALQLALDQLSLLGLDSDEGASLYDSEP----------RKKSVNMTECVPVPSSEH 77
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSXI 603
VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAAEHFS I
Sbjct: 78 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMI 137
Query: 604 RASRKCGSA 630
RASR +A
Sbjct: 138 RASRNKNTA 146
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 172 VGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 221
>AY950678-1|AAY34146.1| 569|Homo sapiens MEX3B protein.
Length = 569
Score = 165 bits (401), Expect = 2e-40
Identities = 91/129 (70%), Positives = 100/129 (77%), Gaps = 1/129 (0%)
Frame = +1
Query: 247 VEDQRAFKLALE-LSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEH 423
++DQRA +LAL+ LS+L L + AS P KKS NMTECVPVPSSEH
Sbjct: 28 LDDQRALQLALDQLSLLGLDSDEGASLYDSEP----------RKKSVNMTECVPVPSSEH 77
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSXI 603
VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAAEHFS I
Sbjct: 78 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMI 137
Query: 604 RASRKCGSA 630
RASR +A
Sbjct: 138 RASRNKNTA 146
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 172 VGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 221
>AK131424-1|BAD18571.1| 569|Homo sapiens protein ( Homo sapiens
cDNA FLJ16544 fis, clone OCBBF3003761. ).
Length = 569
Score = 165 bits (401), Expect = 2e-40
Identities = 91/129 (70%), Positives = 100/129 (77%), Gaps = 1/129 (0%)
Frame = +1
Query: 247 VEDQRAFKLALE-LSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEH 423
++DQRA +LAL+ LS+L L + AS P KKS NMTECVPVPSSEH
Sbjct: 28 LDDQRALQLALDQLSLLGLDSDEGASLYDSEP----------RKKSVNMTECVPVPSSEH 77
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSXI 603
VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAAEHFS I
Sbjct: 78 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMI 137
Query: 604 RASRKCGSA 630
RASR +A
Sbjct: 138 RASRNKNTA 146
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 172 VGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 221
>AY950680-1|AAY34148.1| 651|Homo sapiens MEX3D protein.
Length = 651
Score = 160 bits (389), Expect = 5e-39
Identities = 82/108 (75%), Positives = 87/108 (80%), Gaps = 4/108 (3%)
Frame = +1
Query: 373 KKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDV 552
KKS NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV
Sbjct: 174 KKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDV 233
Query: 553 ARAKREILSAAEHFSXIRASR-KCGSAP---RRPPARPDTSPXRCACP 684
AKREILSAAEHFS IRA+R K G P + PP P + + P
Sbjct: 234 EMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVP 281
Score = 55.2 bits (127), Expect = 3e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 285 VGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 334
>AB107353-1|BAC67658.1| 515|Homo sapiens KIAA2031 protein protein.
Length = 515
Score = 160 bits (389), Expect = 5e-39
Identities = 82/108 (75%), Positives = 87/108 (80%), Gaps = 4/108 (3%)
Frame = +1
Query: 373 KKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDV 552
KKS NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV
Sbjct: 38 KKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDV 97
Query: 553 ARAKREILSAAEHFSXIRASR-KCGSAP---RRPPARPDTSPXRCACP 684
AKREILSAAEHFS IRA+R K G P + PP P + + P
Sbjct: 98 EMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVP 145
Score = 55.2 bits (127), Expect = 3e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 149 VGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 198
>DQ225272-1|ABB04031.1| 165|Homo sapiens ring finger and KH domain
containing 1 protein variant 1 protein.
Length = 165
Score = 159 bits (387), Expect = 9e-39
Identities = 81/98 (82%), Positives = 84/98 (85%), Gaps = 4/98 (4%)
Frame = +1
Query: 373 KKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDV 552
KKS NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV
Sbjct: 64 KKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDV 123
Query: 553 ARAKREILSAAEHFSXIRASR-KCGSAP---RRPPARP 654
AKREILSAAEHFS IRA+R K G P + PP P
Sbjct: 124 EMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLP 161
>AY950677-1|AAY34145.1| 520|Homo sapiens MEX3A protein.
Length = 520
Score = 157 bits (381), Expect = 5e-38
Identities = 80/107 (74%), Positives = 86/107 (80%), Gaps = 1/107 (0%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKE 546
R K S N TECVPVP+SEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGR+E
Sbjct: 125 RLKGSSNTTECVPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRRE 184
Query: 547 DVARAKREILSAAEHFSXIRASR-KCGSAPRRPPARPDTSPXRCACP 684
DVA A+REI+SAAEHFS IRASR K G+A PA P R P
Sbjct: 185 DVATARREIISAAEHFSMIRASRNKSGAAFGVAPALPGQVTIRVRVP 231
Score = 51.6 bits (118), Expect = 3e-06
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +TNTYI TP R +PVF +TG +V RA+ EI
Sbjct: 235 VGLVVGPKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGNVERAREEI 284
>AY950679-1|AAY34147.1| 659|Homo sapiens MEX3C protein.
Length = 659
Score = 156 bits (379), Expect = 8e-38
Identities = 75/81 (92%), Positives = 77/81 (95%)
Frame = +1
Query: 373 KKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDV 552
+KS N TECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEP+FVVTGRKEDV
Sbjct: 227 RKSVNTTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDV 286
Query: 553 ARAKREILSAAEHFSXIRASR 615
A AKREILSAAEHFS IRASR
Sbjct: 287 AMAKREILSAAEHFSMIRASR 307
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 338 VGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 387
>BC113384-1|AAI13385.1| 489|Homo sapiens MEX3D protein protein.
Length = 489
Score = 155 bits (377), Expect = 1e-37
Identities = 79/104 (75%), Positives = 84/104 (80%), Gaps = 4/104 (3%)
Frame = +1
Query: 385 NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAK 564
NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV AK
Sbjct: 1 NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAK 60
Query: 565 REILSAAEHFSXIRASR-KCGSAP---RRPPARPDTSPXRCACP 684
REILSAAEHFS IRA+R K G P + PP P + + P
Sbjct: 61 REILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVP 104
Score = 55.2 bits (127), Expect = 3e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 108 VGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 157
>DQ225273-1|ABB04032.1| 130|Homo sapiens ring finger and KH domain
containing 1 protein variant 2 protein.
Length = 130
Score = 155 bits (375), Expect = 3e-37
Identities = 74/80 (92%), Positives = 76/80 (95%)
Frame = +1
Query: 373 KKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDV 552
KKS NMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV
Sbjct: 51 KKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDV 110
Query: 553 ARAKREILSAAEHFSXIRAS 612
AKREILSAAEHFS IRA+
Sbjct: 111 EMAKREILSAAEHFSIIRAT 130
>BC113741-1|AAI13742.1| 488|Homo sapiens mex-3 homolog D (C.
elegans) protein.
Length = 488
Score = 153 bits (371), Expect = 8e-37
Identities = 78/103 (75%), Positives = 83/103 (80%), Gaps = 4/103 (3%)
Frame = +1
Query: 388 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKR 567
MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV AKR
Sbjct: 1 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKR 60
Query: 568 EILSAAEHFSXIRASR-KCGSAP---RRPPARPDTSPXRCACP 684
EILSAAEHFS IRA+R K G P + PP P + + P
Sbjct: 61 EILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVP 103
Score = 55.2 bits (127), Expect = 3e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 107 VGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 156
>AF458084-1|AAQ04763.1| 488|Homo sapiens bcl-2 ARE RNA binding
protein protein.
Length = 488
Score = 153 bits (371), Expect = 8e-37
Identities = 78/103 (75%), Positives = 83/103 (80%), Gaps = 4/103 (3%)
Frame = +1
Query: 388 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKR 567
MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV AKR
Sbjct: 1 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKR 60
Query: 568 EILSAAEHFSXIRASR-KCGSAP---RRPPARPDTSPXRCACP 684
EILSAAEHFS IRA+R K G P + PP P + + P
Sbjct: 61 EILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVP 103
Score = 55.2 bits (127), Expect = 3e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 107 VGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 156
>AB095929-1|BAC23105.1| 501|Homo sapiens KIAA2009 protein protein.
Length = 501
Score = 110 bits (264), Expect = 7e-24
Identities = 53/61 (86%), Positives = 56/61 (91%)
Frame = +1
Query: 448 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSXIRASRKCGS 627
GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAAEHFS IRASR +
Sbjct: 18 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNT 77
Query: 628 A 630
A
Sbjct: 78 A 78
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
V +VG +G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 104 VGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 153
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 38.3 bits (85), Expect = 0.035
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEP--VFVVTGRKEDVARAKREI 573
V +P EH ++G+ G K++ L KT T I+ P R ++P +TG KE + +A+ E+
Sbjct: 155 VAIPK-EHHRFVIGKNGEKLQDLELKTATKIQIP-RPDDPSNQIKITGTKEGIEKARHEV 212
Query: 574 L 576
L
Sbjct: 213 L 213
Score = 36.7 bits (81), Expect = 0.11
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV-RGEEPVFVVTGRKEDVARAKREIL 576
VP+ H I+G+ G IK +R ++NT I P ++TG++ + A+ IL
Sbjct: 586 VPIFKQFH-KNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRIL 644
Query: 577 SAAEHFSXI 603
S + + I
Sbjct: 645 SIQKDLANI 653
>BC066938-1|AAH66938.1| 648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 43 protein.
Length = 648
Score = 38.3 bits (85), Expect = 0.035
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +1
Query: 343 GFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPV 522
G + PP+D + + C + S V ++GR G KIK +++ TNT I+ E +
Sbjct: 53 GTSRPPEDVAAGHEELPLCFAL-KSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQPESL 111
Query: 523 FVVTGRKEDVARAKREI 573
+ G K +AK I
Sbjct: 112 VKIFGSKAMQTKAKAVI 128
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 38.3 bits (85), Expect = 0.035
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEP--VFVVTGRKEDVARAKREI 573
V +P EH ++G+ G K++ L KT T I+ P R ++P +TG KE + +A+ E+
Sbjct: 155 VAIPK-EHHRFVIGKNGEKLQDLELKTATKIQIP-RPDDPSNQIKITGTKEGIEKARHEV 212
Query: 574 L 576
L
Sbjct: 213 L 213
Score = 36.7 bits (81), Expect = 0.11
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV-RGEEPVFVVTGRKEDVARAKREIL 576
VP+ H I+G+ G IK +R ++NT I P ++TG++ + A+ IL
Sbjct: 586 VPIFKQFH-KNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRIL 644
Query: 577 SAAEHFSXI 603
S + + I
Sbjct: 645 SIQKDLANI 653
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 38.3 bits (85), Expect = 0.035
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEP--VFVVTGRKEDVARAKREI 573
V +P EH ++G+ G K++ L KT T I+ P R ++P +TG KE + +A+ E+
Sbjct: 155 VAIPK-EHHRFVIGKNGEKLQDLELKTATKIQIP-RPDDPSNQIKITGTKEGIEKARHEV 212
Query: 574 L 576
L
Sbjct: 213 L 213
Score = 36.7 bits (81), Expect = 0.11
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV-RGEEPVFVVTGRKEDVARAKREIL 576
VP+ H I+G+ G IK +R ++NT I P ++TG++ + A+ IL
Sbjct: 586 VPIFKQFH-KNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRIL 644
Query: 577 SAAEHFSXI 603
S + + I
Sbjct: 645 SIQKDLANI 653
>BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein.
Length = 898
Score = 36.7 bits (81), Expect = 0.11
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV-RGEEPVFVVTGRKEDVARAKREIL 576
VP+ H I+G+ G IK +R ++NT I P ++TG++ + A+ IL
Sbjct: 216 VPIFKQFH-KNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRIL 274
Query: 577 SAAEHFSXI 603
S + + I
Sbjct: 275 SIQKDLANI 283
>AK131375-1|BAD18526.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ16432 fis, clone BRACE3010076, highly similar
to Vigilin. ).
Length = 577
Score = 36.7 bits (81), Expect = 0.11
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV-RGEEPVFVVTGRKEDVARAKREIL 576
VP+ H I+G+ G IK +R ++NT I P ++TG++ + A+ IL
Sbjct: 83 VPIFKQFH-KNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRIL 141
Query: 577 SAAEHFSXI 603
S + + I
Sbjct: 142 SIQKDLANI 150
>AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens
cDNA FLJ45936 fis, clone PLACE7004103, highly similar
to Vigilin. ).
Length = 847
Score = 36.7 bits (81), Expect = 0.11
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 400 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV-RGEEPVFVVTGRKEDVARAKREIL 576
VP+ H I+G+ G IK +R ++NT I P ++TG++ + A+ IL
Sbjct: 269 VPIFKQFH-KNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEAARSRIL 327
Query: 577 SAAEHFSXI 603
S + + I
Sbjct: 328 SIQKDLANI 336
>AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 379
Score = 36.3 bits (80), Expect = 0.14
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAEHFSXIRAS 612
E + ++I+ E + + S
Sbjct: 95 ETIGEILKKIIPTLEEYQHYKGS 117
>AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear
ribonucleoprotein K isoform a variant protein.
Length = 442
Score = 36.3 bits (80), Expect = 0.14
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 37 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 96
Query: 544 EDVARAKREILSAAEHFSXIRAS 612
E + ++I+ E + + S
Sbjct: 97 ETIGEILKKIIPTLEEYQHYKGS 119
>AL589765-13|CAI17177.1| 561|Homo sapiens tudor and KH domain
containing protein.
Length = 561
Score = 35.5 bits (78), Expect = 0.24
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 418 EHVAEIVGRQGCKIKALRAKTNTYIKTPVR--GEEPVFVVTGRKEDVARAKREI 573
E V I+GRQG IK LR +T I G+E V +++G V +AK I
Sbjct: 62 EAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115
>AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH
domain-containing protein protein.
Length = 561
Score = 35.5 bits (78), Expect = 0.24
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 418 EHVAEIVGRQGCKIKALRAKTNTYIKTPVR--GEEPVFVVTGRKEDVARAKREI 573
E V I+GRQG IK LR +T I G+E V +++G V +AK I
Sbjct: 62 EAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115
>AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding
protein protein.
Length = 606
Score = 35.5 bits (78), Expect = 0.24
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 418 EHVAEIVGRQGCKIKALRAKTNTYIKTPVR--GEEPVFVVTGRKEDVARAKREI 573
E V I+GRQG IK LR +T I G+E V +++G V +AK I
Sbjct: 62 EAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115
>AJ278110-1|CAB92442.1| 648|Homo sapiens DEAD-box protein protein.
Length = 648
Score = 35.1 bits (77), Expect = 0.32
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 343 GFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPV 522
G + PP+ + + C + S V ++GR G KIK +++ TNT I+ E +
Sbjct: 53 GTSRPPEAVAAGHEELPLCFAL-KSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQPESL 111
Query: 523 FVVTGRKEDVARAKREI 573
+ G K +AK I
Sbjct: 112 VKIFGSKAMQTKAKAVI 128
>X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulated
nuclear protein protein.
Length = 464
Score = 33.5 bits (73), Expect = 0.99
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein complex K protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.99
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein.
Length = 464
Score = 33.5 bits (73), Expect = 0.99
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>BC017098-1|AAH17098.1| 360|Homo sapiens PCBP4 protein protein.
Length = 360
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 213 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 271
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 272 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 301
>BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.99
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>BC004153-1|AAH04153.1| 403|Homo sapiens poly(rC) binding protein 4
protein.
Length = 403
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 314
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 315 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 344
>BC003008-1|AAH03008.1| 403|Homo sapiens poly(rC) binding protein 4
protein.
Length = 403
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 314
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 315 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 344
>BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 33.5 bits (73), Expect = 0.99
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 33.5 bits (73), Expect = 0.99
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.99
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>AK023993-1|BAB14761.1| 403|Homo sapiens protein ( Homo sapiens
cDNA FLJ13931 fis, clone Y79AA1000752, moderately
similar to PUTATIVE HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN X. ).
Length = 403
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 314
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 315 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 344
>AF257772-1|AAG02186.1| 424|Homo sapiens RNA binding protein MCG10
protein.
Length = 424
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 277 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 335
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 336 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 365
>AF257771-1|AAG02185.1| 369|Homo sapiens RNA binding protein MCG10
protein.
Length = 369
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 222 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 280
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 281 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 310
>AF257770-1|AAG02184.1| 424|Homo sapiens RNA binding protein MCG10
protein.
Length = 424
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 277 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 335
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 336 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 365
>AF176330-1|AAG09241.1| 403|Homo sapiens alphaCP-4 protein.
Length = 403
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 314
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 315 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 344
>AF141340-1|AAG49443.1| 276|Homo sapiens LYST-interacting protein
LIP4 protein.
Length = 276
Score = 33.5 bits (73), Expect = 0.99
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 433 IVGRQGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAEHFSXI 603
++GRQG KI +R + +IK + E E +TG +A A + +++A +
Sbjct: 99 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-QYLITACLETAKS 157
Query: 604 RASRKCGSAPRRPPARPDTSPXRCACPTASSG 699
+ SAP PA SP A PTA G
Sbjct: 158 TSGGTPSSAPADLPA--PFSPPLTALPTAPPG 187
>AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K transcript variant protein.
Length = 464
Score = 32.7 bits (71), Expect = 1.7
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 RTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRK 543
R++ + M E + S++ ++G+ G IKALR N + P G E + ++
Sbjct: 35 RSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISTDI 94
Query: 544 EDVARAKREILSAAE 588
E + ++I+ E
Sbjct: 95 ETIGEILKKIIPTLE 109
>AL607035-3|CAI15908.1| 403|Homo sapiens novel protein (CGI-18)
protein.
Length = 403
Score = 31.9 bits (69), Expect = 3.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 415 SEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGR-KEDVARAKREI 573
S V IVG++G K + +T T I P G++ V+TG+ + V A+ I
Sbjct: 98 SRQVMHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 151
>AL589765-14|CAI17175.1| 516|Homo sapiens tudor and KH domain
containing protein.
Length = 516
Score = 31.9 bits (69), Expect = 3.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 418 EHVAEIVGRQGCKIKALRAKTNTYIKTPVR--GEEPVFVVTGRKEDVARAK 564
E V I+GRQG IK LR +T I G+E V +++G + AK
Sbjct: 62 EAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQASGAK 112
>BC067878-1|AAH67878.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 53 protein.
Length = 631
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFV-VTGRKEDVARAKREI 573
V ++G G KIK L+ TNT I+ + GE V + G +E A+AK I
Sbjct: 60 VGVVIGYSGSKIKDLQHSTNTKIQI-INGESEAKVRIFGNREMKAKAKAAI 109
>BC051703-1|AAH51703.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 53 protein.
Length = 631
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFV-VTGRKEDVARAKREI 573
V ++G G KIK L+ TNT I+ + GE V + G +E A+AK I
Sbjct: 60 VGVVIGYSGSKIKDLQHSTNTKIQI-INGESEAKVRIFGNREMKAKAKAAI 109
>AY039237-1|AAK72102.1| 630|Homo sapiens DEAD-box protein CAGE
protein.
Length = 630
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 424 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFV-VTGRKEDVARAKREI 573
V ++G G KIK L+ TNT I+ + GE V + G +E A+AK I
Sbjct: 60 VGVVIGYSGSKIKDLQHSTNTKIQI-INGESEAKVRIFGNREMKAKAKAAI 109
>AL589765-15|CAI17176.1| 557|Homo sapiens tudor and KH domain
containing protein.
Length = 557
Score = 31.1 bits (67), Expect = 5.3
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 418 EHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 573
E V I+GRQG IK A+ + + T G+E V +++G V +AK I
Sbjct: 62 EAVKLIIGRQGANIKQTGARID--VDTEDVGDERVLLISGFPVQVCKAKAAI 111
>BC120960-1|AAI20961.1| 282|Homo sapiens keratin associated protein
10-1 protein.
Length = 282
Score = 30.7 bits (66), Expect = 6.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 394 PSCSATSWSGRPEEARTRAGSPAGCSPASCRPGSACSAP 278
P+C TS RP + + P C PA C P S+C AP
Sbjct: 218 PACCTTSCC-RPSSSVSLLCRPV-CQPACCMPVSSCCAP 254
>BC120959-1|AAI20960.1| 282|Homo sapiens keratin associated protein
10-1 protein.
Length = 282
Score = 30.7 bits (66), Expect = 6.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 394 PSCSATSWSGRPEEARTRAGSPAGCSPASCRPGSACSAP 278
P+C TS RP + + P C PA C P S+C AP
Sbjct: 218 PACCTTSCC-RPSSSVSLLCRPV-CQPACCMPVSSCCAP 254
>X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated
chondroitin sulfate proteoglycan (MCSP) protein.
Length = 2322
Score = 30.3 bits (65), Expect = 9.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 361 PEEARTRAGSPAGCSPASCRPGSACSAPE 275
PE ART AG P +P PG S+PE
Sbjct: 2179 PEAARTEAGKPESSTPTG-EPGPMASSPE 2206
>BC128110-1|AAI28111.1| 327|Homo sapiens CSPG4 protein protein.
Length = 327
Score = 30.3 bits (65), Expect = 9.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 361 PEEARTRAGSPAGCSPASCRPGSACSAPE 275
PE ART AG P +P PG S+PE
Sbjct: 211 PEAARTEAGKPESSTPTG-EPGPMASSPE 238
>BC107118-1|AAI07119.2| 273|Homo sapiens hypothetical protein
FLJ11235 protein.
Length = 273
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 370 SGRPEEARTRAGSPAGCSPASCRPG-SACSAP 278
SG R G+P G SP +C PG C P
Sbjct: 142 SGESSLGRASGGAPGGSSPGACGPGPGVCKKP 173
>BC107117-1|AAI07118.2| 273|Homo sapiens hypothetical protein
FLJ11235 protein.
Length = 273
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 370 SGRPEEARTRAGSPAGCSPASCRPG-SACSAP 278
SG R G+P G SP +C PG C P
Sbjct: 142 SGESSLGRASGGAPGGSSPGACGPGPGVCKKP 173
>AY359468-1|AAQ62842.1| 2322|Homo sapiens melanoma chondroitin sulfate
proteoglycan protein.
Length = 2322
Score = 30.3 bits (65), Expect = 9.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 361 PEEARTRAGSPAGCSPASCRPGSACSAPE 275
PE ART AG P +P PG S+PE
Sbjct: 2179 PEAARTEAGKPESSTPTG-EPGPMASSPE 2206
>AK002097-1|BAA92083.1| 273|Homo sapiens protein ( Homo sapiens
cDNA FLJ11235 fis, clone PLACE1008488. ).
Length = 273
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 370 SGRPEEARTRAGSPAGCSPASCRPG-SACSAP 278
SG R G+P G SP +C PG C P
Sbjct: 142 SGESSLGRASGGAPGGSSPGACGPGPGVCKKP 173
>AB076347-1|BAD01534.1| 282|Homo sapiens keratin associated protein
protein.
Length = 282
Score = 30.3 bits (65), Expect = 9.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 394 PSCSATSWSGRPEEARTRAGSPAGCSPASCRPGSACSAP 278
P+C TS RP + + P C PA C P S+C AP
Sbjct: 218 PACCTTSCC-RPSSSVSLLCRPV-CRPACCMPVSSCCAP 254
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,227,723
Number of Sequences: 237096
Number of extensions: 1884151
Number of successful extensions: 7769
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 6891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7747
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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