Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H18
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 4.5
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 4.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 7.8
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 7.8
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 7.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPP 801
GPPPP GG S G PPPP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPP 801
GPPPP GG P G PPPP
Sbjct: 725 GPPPPPPPGGLP-PITGGPPPPPPP 748
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPP 801
GPPPP GG S G PPPP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPP 801
GPPPP GG P G PPPP
Sbjct: 725 GPPPPPPPGGLP-PITGGPPPPPPP 748
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPP 801
GPPPP GG S G PPPP
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPPPPP 348
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPP 801
GPPPP GG P G PPPP
Sbjct: 308 GPPPPPPPGGLP-PITGGPPPPPPP 331
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 872 PPPPAXWGGXXTPSXGXXXTPPPPK 798
PPPP G P G PPPP+
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPPR 304
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPPKK 795
G PPP GG P PPPP +
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPR 304
Score = 24.6 bits (51), Expect(2) = 5.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 681 GXPXPPXXFFXXGAXXPPXKGKPPP 607
G P PP G+ PP G PPP
Sbjct: 278 GSPPPPPA---GGSPPPPRAGSPPP 299
Score = 22.6 bits (46), Expect(2) = 5.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 876 GSPPXRRLGXXXNPLXGXXXNPPPA 802
GSPP R G P G PPPA
Sbjct: 262 GSPPPPRTGSPPPPPTGSPP-PPPA 285
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 872 PPPPAXWGGXXTPSXGXXXTPPPPK 798
PPPP G P G PPPP+
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPPR 325
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPPKK 795
G PPP GG P PPPP +
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPR 325
Score = 24.6 bits (51), Expect(2) = 5.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 681 GXPXPPXXFFXXGAXXPPXKGKPPP 607
G P PP G+ PP G PPP
Sbjct: 299 GSPPPPPA---GGSPPPPRAGSPPP 320
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 876 GSPPXRRLGXXXNPLXGXXXNPPPA 802
GSPP R G P G PPPA
Sbjct: 283 GSPPPPRTGSPPPPPTGSPP-PPPA 306
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 872 PPPPAXWGGXXTPSXGXXXTPPPPK 798
PPPP G P G PPPP+
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPPR 310
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 875 GPPPPAXWGGXXTPSXGXXXTPPPPKK 795
G PPP GG P PPPP +
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPR 310
Score = 24.6 bits (51), Expect(2) = 5.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 681 GXPXPPXXFFXXGAXXPPXKGKPPP 607
G P PP G+ PP G PPP
Sbjct: 284 GSPPPPPA---GGSPPPPRAGSPPP 305
Score = 22.6 bits (46), Expect(2) = 5.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 876 GSPPXRRLGXXXNPLXGXXXNPPPA 802
GSPP R G P G PPPA
Sbjct: 268 GSPPPPRTGSPPPPPTGSPP-PPPA 291
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 807 GGGXXXPPGGGXXPXPXGGXGG 872
GGG P GGG P GG GG
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGG 636
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 807 GGGXXXPPGGGXXPXPXGGXGG 872
GGG P GGG P GG GG
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGG 636
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 872 PPPPAXWGGXXTPSXGXXXTPPPP 801
PPPP GG P PPPP
Sbjct: 95 PPPPPMMGGIPPPPPMFGAPPPPP 118
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 802 GGGGVXXXPXEGVXXPPQXAGGGGP 876
GGGG P G+ PP G GGP
Sbjct: 159 GGGGDPRGPPGGMGGPPGHGGMGGP 183
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 802 GGGGVXXXPXEGVXXPPQXAGGGGP 876
GGGG P G+ PP G GGP
Sbjct: 439 GGGGDPRGPPGGMGGPPGHGGMGGP 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,737,937
Number of Sequences: 27780
Number of extensions: 160744
Number of successful extensions: 583
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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