Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H15
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   6.1  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   6.1  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   8.1  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 699 PFHLVQKLPRHDLQTKRDVRLVYPIL 622
           PF LV+ LP+ + ++K+D  L++  L
Sbjct: 76  PFLLVRYLPKLEFESKKDTGLIFSAL 101


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 704 RFLSILSKNYPGMIFRQSEMYV 639
           ++LS L K YP M+FR  E+ V
Sbjct: 43  QYLSNLEKRYPIMVFRNDEITV 64


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 675 VVFGQDGKETAEVTWHGKGNEDXRGRSVGDGVSARSWLYVAGKPVV 812
           V++G   +    + W   G E+ R  S+G   +   W    GKP+V
Sbjct: 60  VLYGGVDRSIEGIVW-STGEEELRLFSIGFSTTITEWNLHTGKPLV 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,849
Number of Sequences: 5004
Number of extensions: 63394
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)