Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H15
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0982 - 29914146-29914187,29914839-29915168                       29   4.9  
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941...    29   6.4  
02_01_0498 - 3614621-3614674,3614780-3617161                           29   6.4  
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124...    28   8.5  

>04_04_0982 - 29914146-29914187,29914839-29915168
          Length = 123

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 397 SERTSSHSIHGNFILTKLFECKFTSLSPILIFVKLFSTAPTIMENNAKSASLSLRSCFSN 218
           S RTSS +++G  I +   +   T+L+      ++  T P+  +NN  S  L++ S F +
Sbjct: 19  SSRTSSSAVNGGSISSGAADS--TTLARSTTARRIHLTTPSCFDNNDDSGRLAVLSSFDD 76

Query: 217 KSHTFCMPSIG 185
                  P  G
Sbjct: 77  NDRYLVAPRHG 87


>04_03_0853 -
           20292734-20292968,20293056-20293144,20293239-20294111,
           20294203-20294364
          Length = 452

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 636 QDVHLAL-SEDHAWVVFGQDGKETAEVTWHGKGNEDXRGRSVGDGVSARSWLYVAGK 803
           Q VH++L   +H  V +  + K    V  +GK + +    + G+  S R +LY +GK
Sbjct: 53  QQVHVSLVGANHMRVSWITEDKHVKSVVEYGKVSGNYTASATGEHTSYRYFLYSSGK 109


>02_01_0498 - 3614621-3614674,3614780-3617161
          Length = 811

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 408 FVNLMRTGVDAKLLSGAYATRDLVKKVADVVWNSLTRSYYKDRAHLQSIYSF 563
           + NL+ + + A+ +  A A  D + + +   WN+L   Y ++  H  +I  F
Sbjct: 354 YSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELF 405


>09_02_0565 +
           10710770-10711003,10711368-10711527,10712277-10712477,
           10712564-10712628,10712740-10712767,10712847-10712923,
           10713023-10713109,10713572-10713622,10713857-10713937,
           10714125-10714346,10714424-10714517,10714608-10714748,
           10716383-10716444,10716519-10717106
          Length = 696

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 474 LVKKVADVVWNSLTRSYYKDRAHLQSIYSFLTGNKLDCFGVAFAVTAG 617
           +++KVA+ +W +   SY+     ++  +  + G+ +  FG AF    G
Sbjct: 57  ILRKVANFLWQTDGNSYHHVWPEMELGWQIVLGSLIGFFGAAFGSVGG 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,242,842
Number of Sequences: 37544
Number of extensions: 385864
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)