Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H13
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 293 9e-80
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 291 4e-79
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 291 5e-79
04_01_0253 - 3358090-3359052 29 3.7
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.9
06_03_0290 - 19193707-19193752,19193822-19194090 28 8.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 293 bits (720), Expect = 9e-80
Identities = 136/216 (62%), Positives = 176/216 (81%)
Frame = +3
Query: 135 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 314
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 315 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 494
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 495 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 674
CIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIE 198
Query: 675 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGE 782
KA I+PL++V +RKVK+LK P+F++ KLME+HG+
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 291 bits (715), Expect = 4e-79
Identities = 136/216 (62%), Positives = 175/216 (81%)
Frame = +3
Query: 135 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 314
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 315 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 494
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 495 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 674
CIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIE 198
Query: 675 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGE 782
KA I+PL++V +RKVK+LK P+F++ KLME+HG+
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 291 bits (714), Expect = 5e-79
Identities = 136/216 (62%), Positives = 175/216 (81%)
Frame = +3
Query: 135 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 314
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 315 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 494
+++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 495 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 674
CIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIE 198
Query: 675 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGE 782
K+ I+PL++V IRKVK+LK P+F++ KLME+HG+
Sbjct: 199 KSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
>04_01_0253 - 3358090-3359052
Length = 320
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 801 PLASTXXRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRC 667
PL RR +TSR+ +G +T + G R GRP RC
Sbjct: 62 PLRCRRRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRC 106
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 627 EVVNKLIPDSIAKDIEKACHGIYPLRD 707
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 370 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 459
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,659,256
Number of Sequences: 37544
Number of extensions: 489274
Number of successful extensions: 1427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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