Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H12
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical pr...   106   2e-23
AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical ...    41   0.001

>Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical
           protein T09E8.3 protein.
          Length = 145

 Score =  106 bits (254), Expect = 2e-23
 Identities = 52/126 (41%), Positives = 67/126 (53%)
 Frame = +3

Query: 126 FLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXSGEWFSLLIN 305
           F IFF+I+ VI  DEL+TDYKNPI+QC +                     S +  S+L N
Sbjct: 19  FCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILPEYIIHGTFTVLFIFSWQLISILAN 78

Query: 306 IPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGWIKXXXXXXXXXXXXXGMI 485
           +PL  YHI+ Y  RPVMSGPG+YDPT+I+N   L+S  R  WIK              MI
Sbjct: 79  LPLAFYHIYTYAKRPVMSGPGIYDPTTILNRSTLSSTLRISWIKLAFYLVSFFYYLYAMI 138

Query: 486 VVLIAA 503
             L+ +
Sbjct: 139 YTLVTS 144


>AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical
           protein Y64H9A.1 protein.
          Length = 56

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +3

Query: 351 VMSGPGLYDPTSIMNADVLTSCQREGWIK 437
           +M GPG+YDPT+I+N   L+S  R  WIK
Sbjct: 1   MMPGPGIYDPTTILNRSTLSSTLRISWIK 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,972
Number of Sequences: 27780
Number of extensions: 259643
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)