Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H11
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                         76   3e-14
03_04_0027 + 16593133-16593573                                         75   8e-14
02_01_0563 + 4134954-4135388                                           75   8e-14
02_05_0636 + 30536717-30537022,30538836-30538952,30539026-305394...    28   8.7  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 35/62 (56%), Positives = 37/62 (59%)
 Frame = +3

Query: 81  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 260
           M TS +K RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 261 FH 266
           FH
Sbjct: 61  FH 62



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 19/77 (24%), Positives = 40/77 (51%)
 Frame = +1

Query: 274 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHS 453
           +NK + P +N+++LW++V  +   + A A  GK P     Q    +V  +   P+     
Sbjct: 65  RNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVV 122

Query: 454 KSKVLLKISREENQGCG 504
           K+K++ K++ ++ +  G
Sbjct: 123 KAKLISKVAEKKIKAAG 139


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 35/62 (56%), Positives = 36/62 (58%)
 Frame = +3

Query: 81  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 260
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 261 FH 266
           FH
Sbjct: 61  FH 62



 Score = 34.7 bits (76), Expect = 0.100
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 277 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQV-ARQRQTPQTTCHS 453
           N+  CP +N+++LW++V      K A A  GK P     Q    +V  +    PQ     
Sbjct: 66  NRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVV 122

Query: 454 KSKVLLKISREENQGCG 504
           K+K++ K++ ++ +  G
Sbjct: 123 KAKLISKVAEKKIKAAG 139


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 35/62 (56%), Positives = 36/62 (58%)
 Frame = +3

Query: 81  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 260
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 261 FH 266
           FH
Sbjct: 61  FH 62



 Score = 31.5 bits (68), Expect = 0.93
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 277 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQV-ARQRQTPQTTCHS 453
           N+  CP +N+++LW++V  +     A A  GK P     Q    +V  +    P+     
Sbjct: 66  NRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVV 120

Query: 454 KSKVLLKISREENQGCG 504
           K+K++ K++ ++ +  G
Sbjct: 121 KAKLISKVAEKKIKAAG 137


>02_05_0636 +
           30536717-30537022,30538836-30538952,30539026-30539478,
           30539589-30540647
          Length = 644

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 385 DXRGPCHLEQMHTSAS-SVQRLMSKAYLSSKLDRNSCSXLKWKFLIPSLPKYPGWYLSML 209
           D R P  LE M      S  +   +A++   +D  + +  K +  + ++   P + L  L
Sbjct: 272 DFRCPISLELMRDPVIVSTGQTYERAFIQRWIDCGNRTCPKTQLKLQNITLTPNYVLRSL 331

Query: 208 IL*WCSPPALPRP 170
           IL WC    +  P
Sbjct: 332 ILQWCEEKGIEPP 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,575
Number of Sequences: 37544
Number of extensions: 339035
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)