Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H08
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867... 80 2e-15
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 32 0.69
12_02_0962 + 24854731-24854830,24854966-24855076,24855332-248554... 31 0.91
07_03_0402 - 17734494-17734550,17736775-17736819,17738333-177383... 31 1.2
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937... 30 2.8
12_02_0945 - 24670970-24671023,24671512-24671570,24671998-246721... 29 3.7
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 6.4
09_04_0567 + 18585556-18586113 28 8.5
07_03_1571 + 27811510-27811613,27812493-27812563,27812798-278128... 28 8.5
07_03_1416 - 26415330-26417153 28 8.5
>01_07_0191 +
41885121-41885909,41886152-41886190,41886701-41886784,
41887331-41887413,41887501-41887588,41887736-41887990,
41888275-41888403
Length = 488
Score = 80.2 bits (189), Expect = 2e-15
Identities = 38/76 (50%), Positives = 55/76 (72%)
Frame = +3
Query: 513 LXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLEREQGGASVLEANGIAVKSLFTLTNL 692
L VED+VT+G S+LETV LR+ GL+V AV+V++REQGG L ANG+A+ SL TLT +
Sbjct: 116 LIVEDLVTTGSSVLETVAPLREVGLVVADAVVVIDREQGGRENLAANGVALHSLMTLTEV 175
Query: 693 VRMLHKAGRIDNDTVE 740
+ +L K G++ + +
Sbjct: 176 LAVLVKRGKLGEEKAQ 191
Score = 77.8 bits (183), Expect = 1e-14
Identities = 38/113 (33%), Positives = 63/113 (55%)
Frame = +2
Query: 176 STLQDLAVQLFDAGAVRLEDIEAKVGRRTPIYFDLRVIVSHPKLMVAVSHQLEKLIKDVH 355
+ ++ L ++L AV+ K G +PIY DLR++V+HP+L+ V+ L L
Sbjct: 4 AAMESLILELHAIEAVKFGAFVLKSGITSPIYLDLRMLVAHPRLLSTVASLLGSLPATRP 63
Query: 356 HDMICGVPYAALPLAVVISINTDRPMIMKRKETKLYATKKLLEGVYEKNQTCL 514
+D++CGVPY ALP+A V+S PM+++R +A + L+G + L
Sbjct: 64 YDLLCGVPYTALPIASVLSAAASVPMLLRRYHVTPHAAAECLDGSFRAGDAVL 116
>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 31.9 bits (69), Expect = 0.69
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +2
Query: 146 LHSQSPSIMTSTLQDLAVQLFDAGAVRLEDIEAKVG----RRTPIYFDLRVIVSHPKLMV 313
+H +S ++ + +D+ + A ++D E ++ R P Y I + K M
Sbjct: 1027 IHPESYALAKTLAKDVFAEEAPHEANEMDDDEQEMAIEHVREKPRYLKSLDIREYMKSMP 1086
Query: 314 AVSHQLEKLIKDVHHDMICGVPYAALPLA 400
H E+ +KD+ +++CG P P A
Sbjct: 1087 EEFHNKEQTLKDIKWELLCGFPDWRTPYA 1115
>12_02_0962 +
24854731-24854830,24854966-24855076,24855332-24855424,
24855538-24855687,24855934-24855992,24856081-24856134
Length = 188
Score = 31.5 bits (68), Expect = 0.91
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 507 RALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLEREQ 626
RA+ V+D++ +GG+L V+ L + G V V+E ++
Sbjct: 130 RAIIVDDLIATGGTLCAAVKLLERAGAEVVECACVVELQE 169
>07_03_0402 -
17734494-17734550,17736775-17736819,17738333-17738391,
17739128-17739277,17741868-17741960,17742589-17742598
Length = 137
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 504 KRALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLE 617
+RAL V+D+V +GG+L + L + G V V+E
Sbjct: 62 ERALVVDDLVATGGTLCAAIVLLERAGAEVVECACVIE 99
>05_03_0423 +
13792424-13792564,13792712-13792944,13793681-13793756,
13794003-13794089,13794500-13794553,13794654-13794695,
13794818-13794896,13795059-13795129,13795235-13795297
Length = 281
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 631 PPCSRSSTITACVTIKPSLRKVSTVSSKLPPDVTTSSTXKARLIFFIYAL 482
P CS SS+ P LRK ++S T+S+ + L+ F Y+L
Sbjct: 91 PSCSSSSSQDVAPPTLPPLRKALSLSDMADLLTTSSTFSRESLVIFFYSL 140
>12_02_0945 -
24670970-24671023,24671512-24671570,24671998-24672147,
24672253-24672345,24672491-24672601,24673158-24673251
Length = 186
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 507 RALXVEDVVTSGGSLLETVETLRKEGLIVTHAVIVLE 617
RA+ V+D++ +GG+L V+ + + G V V+E
Sbjct: 128 RAVVVDDLIATGGTLSAAVKLIERAGAEVVECACVIE 164
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +3
Query: 666 KSLFTLTNLVRMLHKAGRIDNDTVELIFDHIKECQFGTKDXLE*ILNLSLVNCNWSVLIX 845
K+ LV +LH AGR++ V+++ + + + G K + ++ + + + L
Sbjct: 600 KATVLSNELVHVLHAAGRLEKALVQMVVEDVADSDDGGKSVVREVVPYDVESIVFGFLRT 659
Query: 846 W 848
W
Sbjct: 660 W 660
>09_04_0567 + 18585556-18586113
Length = 185
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 209 DAGAVRLEDIEAKVGRRTPIYFDLRVIVSHPKLMVAVSH 325
DAG+ R++ + A GR P+ LR +V+ +++ V H
Sbjct: 50 DAGSGRIDAVRAIAGRAPPLPLLLRGLVAAADVVLCVEH 88
>07_03_1571 +
27811510-27811613,27812493-27812563,27812798-27812889,
27812963-27813022,27813130-27813351,27813450-27813526,
27813618-27813687,27813793-27813906,27813985-27814051,
27814259-27814363,27814470-27814594
Length = 368
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 146 LHSQ-SPSIMTSTLQDLAVQLFDAGAVRLEDIE---AKVGRRTPIYFDL 280
LH+ + S+ STL +LA QL D G + ED++ K GR P F L
Sbjct: 21 LHAHLNGSVRDSTLLELAKQLGDKGDIVFEDVKDVIMKNGRSLPECFRL 69
>07_03_1416 - 26415330-26417153
Length = 607
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 651 NGIAVKSLFTLTNLVRMLHKAGRID 725
+G A LF T LV M KAGR+D
Sbjct: 100 SGFAAADLFVRTALVEMYAKAGRVD 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,031,096
Number of Sequences: 37544
Number of extensions: 426206
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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