Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H08
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.23 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.23 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.91 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 341 IKDVHHDMICGVPYAALPLAVVISINTDRPMIMKRKETKLYATKKLLEGVYEKNQ 505
           + +VH   +     +A  +A +I I   R    + KE +LYA   L++ V+EK Q
Sbjct: 301 LNEVHTASLRKFILSAFDMARIIQITPKRIQYAQHKENELYA--NLMKIVHEKQQ 353


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 341 IKDVHHDMICGVPYAALPLAVVISINTDRPMIMKRKETKLYATKKLLEGVYEKNQ 505
           + +VH   +     +A  +A +I I   R    + KE +LYA   L++ V+EK Q
Sbjct: 339 LNEVHTASLRKFILSAFDMARIIQITPKRIQYAQHKENELYA--NLMKIVHEKQQ 391


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -3

Query: 249 TFASMSSSRTAPASNNCTARSCRVDVMILGL*ECNK*NPLCINKKKT--WNRL--IKHFT 82
           T+ S  SS +A + N      C+ D  +LG+ +  + NP  + +KK+  W +L  I H+T
Sbjct: 89  TYNSFLSSDSASSGNVY----CKCDDCLLGIVDDYQRNPSVVGRKKSSGWRKLRNIVHWT 144


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 834 LTNYN*LVIDLISTPXYLSFQIGIPLYDQILIRL 733
           L+NYN L+  +++    L+ Q+G+ L   I + L
Sbjct: 42  LSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNL 75


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 296 HPKLMVAVSHQLEKLIKDVHHDMICGVPYAALPLAVVISINTDRPMIMKRK-ETKLYATK 472
           HP+ ++ VS +   LI DV + +   V Y    + V +   T +P  M+R+ +T+++  K
Sbjct: 370 HPETIIDVSRRRSSLICDV-YGVNESVSYERGSMTVSV---TSKPSTMERQTQTEVWIPK 425


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 92  FISLFQVFFLLIHKGFYLLHSQSPSIM 172
           F  L  VF L    G+YL H+  P+ +
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTYIPTCL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,717
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)