Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H07
         (1000 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.1  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   4.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.5  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 792 PPPXPPXXPPXGPPTXXX-TPXPPXXPXPPPGXPPXXPP 905
           P P      P  PPT       PP    PP   PP  PP
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 792 PPPXPPXXPPXGPPTXXXTP 851
           P P PP  PP   P+   +P
Sbjct: 26  PEPYPPRCPPIYEPSCQYSP 45


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +3

Query: 762 PXPPXETXXXPPPXPPXXPPXGP 830
           P    +    PPP P   PP  P
Sbjct: 727 PHEAFDVKLPPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +3

Query: 762 PXPPXETXXXPPPXPPXXPPXGP 830
           P    +    PPP P   PP  P
Sbjct: 619 PHEAFDVKLPPPPHPHHQPPRNP 641


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.140    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,395
Number of Sequences: 336
Number of extensions: 1559
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28444075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)