Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H07
         (1000 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.009
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.009
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 798 PXPPXXPPXGPPTXXXTPXPPXXPXPPPGXPPXXPPXXPP 917
           P P   P   P        P     PPPG PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 27.1 bits (57), Expect = 0.26
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
 Frame = +3

Query: 792 PPPXPPXXPPXGPPTXXXTPXPPXXPXP--PPGXPPXXPP 905
           P P P        P     P P   P P  PPG PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 768 PPXETXXXPPPXPPXXPPXGPPT 836
           PP  +   PP  PP  PP   P+
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 21.8 bits (44), Expect = 10.0
 Identities = 13/47 (27%), Positives = 14/47 (29%)
 Frame = +3

Query: 816 PPXGPPTXXXTPXPPXXPXPPPGXPPXXPPXXPPXXXXPXXXXXKAP 956
           P  G P     P P   P  P    P  P   PP    P     + P
Sbjct: 16  PSSGAP--GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
 Frame = -1

Query: 835 VGGPX----GGXXGGXGGGXXXVSXGGXGGG 755
           +GGP     GG   G  GG   V     GGG
Sbjct: 19  LGGPGSSSAGGVVTGASGGSIVVGANNGGGG 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.140    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,635
Number of Sequences: 438
Number of extensions: 4726
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33137286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)