Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H06
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    95   1e-20
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   2.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    28   2.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   6.3  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   6.3  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    26   6.3  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   8.4  

>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 43/74 (58%), Positives = 58/74 (78%)
 Frame = +3

Query: 507 EALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDE 686
           E  +  ++N+   +L  LGEDPER GLL TPER AKAML+FTKGY+Q+L EV+N A+F E
Sbjct: 49  EEKVKKISNAISTILECLGEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQE 108

Query: 687 DTDEMVVVKDIEMF 728
           D +EMV+V+DI++F
Sbjct: 109 DHEEMVIVRDIDVF 122


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = -3

Query: 321 SEERHRSLSPRISN---YVWIAN*RDVSAKMAALPLPSSNLFR*RRPCLYHSN*ARSLTL 151
           S   H   SP I +   YV + +   VS+   + P+P+SN    RRP  + +N ++S+  
Sbjct: 376 SRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAPVPNSNSQFPRRPNTFRTNSSKSVGQ 435

Query: 150 DVSDVTARNE 121
             S V +  E
Sbjct: 436 GSSGVDSNQE 445


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +3

Query: 333 VGKYKKAPEALKSFNLADAE-SELEVPGTPMTPRTSTTPGHENCTFHHDLELDHRPPTRE 509
           +GK     +  K   + +A+  ++    +P    +    GH    FHH++ +   P    
Sbjct: 212 IGKPYIKVDPKKVIGIVEADYGDITCANSPQDETSQAIAGHLVDFFHHEVSVGRLPKNLH 271

Query: 510 ALLPDMANSYRLLLTGLGEDP 572
            L   + N    ++ GL   P
Sbjct: 272 PLQSGIGNIANAIIGGLAHSP 292


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 321  KGSFVGKYKKAPEALKSFNLADAESELEVPGTPMTPRTSTT 443
            K S   K KKA  ++K  +  D + +  +PG+  TP+ S+T
Sbjct: 1384 KASAKNKGKKA-SSVKKQSPEDDDDDFIIPGSSSTPKASST 1423


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 658 SSKLWSYPFVKKSIALAARSGVFKSPALSGSSPRPVSKS 542
           SSK     F+K S+  AA S VF S   S +SP+ +SK+
Sbjct: 687 SSKSLQTDFMKASVERAASSRVF-STGTSVTSPQALSKT 724


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 692 RVFIEDGVIQNLFQALVVSFREEEHSFGGTFGR 594
           R  I    +  +FQ+++ ++R+  HSF G  GR
Sbjct: 110 RAQISKTSVSQIFQSMIHNYRDLWHSFKGMCGR 142


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 15  RSHYREFLKILTQSAIRQAIESTA 86
           RSH  EFL+ILT+  I   ++++A
Sbjct: 261 RSHRNEFLRILTEFNIPNKLDNSA 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,771
Number of Sequences: 5004
Number of extensions: 59124
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)