Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H06
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0190 - 17708513-17708548,17708897-17709295                       32   0.54 
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042...    31   1.6  
01_06_0907 - 32897168-32897476,32897547-32897621,32897716-328978...    31   1.6  
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336...    29   3.8  
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326           29   3.8  
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...    29   6.7  

>06_03_0190 - 17708513-17708548,17708897-17709295
          Length = 144

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -3

Query: 612 WRHVRASSRALPFQGPPPGR*VKACMS*PCPVTTPPWW 499
           WR  R  SR     GPPP R  ++ +  PC  TT PWW
Sbjct: 7   WRGHRRRSR-----GPPPSRTSRSRLR-PCLATTRPWW 38


>01_06_0909 - 32903520-32903828,32903899-32903973,32904068-32904235,
            32904508-32904565,32904638-32904879,32905145-32905216,
            32905865-32905943,32906734-32907062,32907137-32907256,
            32907355-32907429,32908260-32908342,32908942-32908984,
            32909271-32909429,32910203-32910281,32910685-32910755,
            32910847-32910946,32911023-32911229,32911348-32911442,
            32912362-32912436,32912621-32912713,32913078-32913182,
            32913851-32913921,32914943-32915096,32916035-32916098,
            32916717-32916800,32917543-32917589,32918352-32918411,
            32918521-32918592
          Length = 1062

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +3

Query: 567  DPERAGLLKTPERAAKAMLFFT-KGYDQSLEEVLNNAIFDE--DTDEMVVVKD 716
            DP+ A +++ PER  +  L+FT + +  SL  VL    FDE  D +E +V K+
Sbjct: 858  DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLRYCNFDESMDGEESLVCKN 909


>01_06_0907 -
           32897168-32897476,32897547-32897621,32897716-32897883,
           32898156-32898213,32898286-32898527,32898630-32898726,
           32898827-32898921
          Length = 347

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +3

Query: 567 DPERAGLLKTPERAAKAMLFFT-KGYDQSLEEVLNNAIFDE--DTDEMVVVKD 716
           DP+ A +++ PER  +  L+FT + +  SL  VL    FDE  D +E +V K+
Sbjct: 143 DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLRYCNFDESMDGEESLVCKN 194


>08_01_0378 +
           3360215-3360253,3360326-3360437,3362176-3362213,
           3363949-3363966,3364629-3364847,3364937-3366727,
           3367764-3367827,3367915-3367975,3368685-3368694
          Length = 783

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -2

Query: 658 SSKLWSYPFVKKSIALAARSGVFKSPALSGSSPRPVSKSLYELAMSG------NNASLVG 497
           SS L S      +I  AAR      P + G++P P  ++L E A         N AS+V 
Sbjct: 363 SSMLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNMASIVT 422

Query: 496 GLWSNSRSWWKVQ 458
              + + +WW  Q
Sbjct: 423 ATVAAASAWWATQ 435


>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
          Length = 386

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 483 LDHRPPTREALLPDMANSYRLLLTGLGEDPERAG 584
           ++ RPP   A  P   + +R LL  +  +PERAG
Sbjct: 1   METRPPRAAAPAPARVSRFRRLLVRVSAEPERAG 34


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 504 REALLPDMANSYRLLLTGLGED 569
           REA LPD+  SY  ++TGL E+
Sbjct: 702 REARLPDLRTSYLTIMTGLTEN 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,805,198
Number of Sequences: 37544
Number of extensions: 466432
Number of successful extensions: 1295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)