Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H04
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 35 0.017
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.49
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 2.0
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 27 2.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 3.5
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 27 3.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 4.6
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 4.6
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 27 4.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.6
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 4.6
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 6.1
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 6.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 8.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 8.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 8.1
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 34.7 bits (76), Expect = 0.017
Identities = 36/143 (25%), Positives = 64/143 (44%)
Frame = +3
Query: 132 ALSIQSQSDRVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTS 311
A+ I S++D V ++ SPS K+ +A S + ++ D P+ +T S L+ F+T
Sbjct: 9 AIVIDSEAD-VDISSSQASPS--KVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTP 65
Query: 312 CLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAE 491
+ + + VLPS D +KS+ D + +S + T T NP +++
Sbjct: 66 LV----SGSEDVLPSPRDALNITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLN 120
Query: 492 KAHQNLLDGVEHFDKTQMKHTTT 560
+ N L + + HT T
Sbjct: 121 SSPPNSLSSQPKHQEFHLFHTPT 143
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.9 bits (64), Expect = 0.49
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +3
Query: 522 EHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERHRELRSH*AEAHGNVRKEPAPHK 701
EH M H E P P + + GE P +H EL H H ++ HK
Sbjct: 309 EHMPPPPMHHEPGEHMPPPPMH--HEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHK 366
Query: 702 G 704
G
Sbjct: 367 G 367
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.7 bits (61), Expect = 1.1
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +3
Query: 276 DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEK 455
D+ +E N L D + + P E ++ + +G E S+ +++ E+ K
Sbjct: 101 DVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESA-K 159
Query: 456 NPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKN---PLPPNRSYRSG 605
+ + A N +GV+ + ++K KN PLPPN Y SG
Sbjct: 160 GSSDENEANTATAPSSNEANGVDK-KQNEIKGKGGSGKNKAKPLPPNSIYVSG 211
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.5
Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 2/133 (1%)
Frame = +3
Query: 66 AITTSAPPAVSCAVTPARTLARA--LSIQSQSDRVAECTNLLSPSSSKIY*FTMACSVSD 239
A +TS+ P S T A + + S+ S + A T L S +S T A S S
Sbjct: 335 ATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS------TSATSASS 388
Query: 240 TPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 419
TP +T + S +NTS + + L SA + +
Sbjct: 389 TPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTT 448
Query: 420 SSQLKHTETQEKN 458
++ T N
Sbjct: 449 ATSASSTPLSSVN 461
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +3
Query: 258 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 416
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 417 DSSQ 428
SSQ
Sbjct: 488 SSSQ 491
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.9 bits (59), Expect = 2.0
Identities = 29/136 (21%), Positives = 53/136 (38%)
Frame = +3
Query: 234 SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 413
+DT L + ++ D + + TS L +N + E+ + + + K
Sbjct: 346 TDTSPLHKIEPISADELVESDDSRTSAL----SNSQNPSDDVENQSDQALEVLSLTNPPK 401
Query: 414 FDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPNRS 593
D++ T +E N + DK V+ KA + ++ + T K P P N+
Sbjct: 402 IDNASADTTLHKETNKI-DKLYVSENKAESAVAS------ESSLSEGTLALKAPAPENKP 454
Query: 594 YRSGEGKEQIPERHRE 641
+S K +PE E
Sbjct: 455 EKSSTSKPPVPENKAE 470
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +1
Query: 82 HPRL*AVL*RPPALSPALSVFSR---SPTE--SLSARIFYPLPH 198
HPRL L PPA SP + + +R P E ++S F P P+
Sbjct: 189 HPRLKVALELPPACSPPIELVNRWYAEPIEMITMSCMAFVPNPN 232
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +3
Query: 459 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERHR 638
P P + + KA E D + H+T+ ++ P NR R + + + RH
Sbjct: 92 PQPSALALTSSKAANRSSTNTEK-DSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHG 150
Query: 639 ELRSH 653
R H
Sbjct: 151 SHRRH 155
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 360 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 539
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 540 QM 545
+
Sbjct: 308 NL 309
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 96 SCAVTPARTLARALSIQSQSDRVAECTNLLSPSSSKIY 209
S + PART A + +AE NL+ P S + Y
Sbjct: 498 STIIAPARTAVEAKESEHDRSLIAEGYNLVKPHSHRSY 535
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 376 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 245
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 483 RQRLCPEAGSSPESRCASAGSNQTSQCRRIKTSGSSQ 373
+QR+ PE S PE+ + +N +++ + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 4.6
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Frame = +3
Query: 237 DTPSLKDLPKVATDLKSQL--EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 410
D P+ D+ V T+L++ + + + R + +E + T + + + + I+
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61
Query: 411 KFDSSQLKHTETQEKNPLP-------DKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 569
K DSSQ+ + K+PL +KD++ K E F +++ +E K
Sbjct: 62 KVDSSQILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETK 121
Query: 570 ----NPLPPNRSYR---SGEGKEQIPERHREL 644
L P RS+R S E ++PE ++
Sbjct: 122 IYKYLLLKPARSFRLLTSNEEWIKVPESRADI 153
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Frame = +3
Query: 324 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP---DKDVVAAEK 494
+++ ++ P+ T K ++++S KH + PLP +K V K
Sbjct: 47 IESVSTLIQPNKSQSVTSPYVKQFTFSSKEYNSHN-KHALQNSQLPLPKTPEKSTVHRPK 105
Query: 495 AHQNLLDGVEHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIP 626
A++ + + + HT+ K P P +S E + P
Sbjct: 106 ANKVEVTDLPSSSSVEHLHTSKHLKGPRLPKNIIKSSEDVQIAP 149
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 4.6
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +3
Query: 243 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 410
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 411 KFDSSQLKHTETQEK 455
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 327 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 506
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 507 LLDGVEHFDKT 539
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 531 DKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERH 635
D+T++KH + KN P + S S + PE H
Sbjct: 299 DRTEIKHMYEKSKNLAPMSESSDSDKTVSTSPESH 333
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 342 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 470
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 383 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 279
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +3
Query: 360 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNL--LDGVEHFD 533
+DV E+ ++S+ + ++ + +E+ K+P D + + +N ++G + D
Sbjct: 960 DDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMD 1019
Query: 534 KTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERHRELRS 650
+T+ + + + +E++P++ + RS
Sbjct: 1020 NVATVDKSTDAVDTSTATVAATTTTAEEELPQKESQERS 1058
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,229
Number of Sequences: 5004
Number of extensions: 68059
Number of successful extensions: 268
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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