Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H04
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0203 + 12986685-12988691 33 0.39
03_02_1016 + 13228113-13228964 32 0.69
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.7
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 29 3.7
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 3.7
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 4.9
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 4.9
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 29 4.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.9
>06_02_0203 + 12986685-12988691
Length = 668
Score = 32.7 bits (71), Expect = 0.39
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +3
Query: 459 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPNRSYRSGEGKEQIPERHR 638
P+P+ + +AA++AH N G EH K + TTT + + + R G Q+ +
Sbjct: 505 PVPNSNAIAADEAHGNATAG-EHDKKETAEQTTTTSASTVGQQQEARDQVG--QLVKLLM 561
Query: 639 ELRSH*AEAHGNVRKEPAP 695
RS A G + P P
Sbjct: 562 RRRSTKKWARGEPKVGPCP 580
>03_02_1016 + 13228113-13228964
Length = 283
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 422 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHD 556
E A AH +G + A+ RRC SG P P RS T HD
Sbjct: 214 EAARAHASNGGKHAAA-RRCSSGNHQPVPRARSTTGMDSLGHGHD 257
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 276 DLKSQLEGFNTSCLRDVDTNEKIVL 350
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 154 PTESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 333
P SL R+ P P I +++PAP PP ++S R+P SSK P P
Sbjct: 641 PPPSLPNRLVPP-PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPP 699
Query: 334 MKR 342
R
Sbjct: 700 ANR 702
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 516 RPRGSGGLSPLRQRLCPEAGSSPESRCASAG 424
R RG+ G+ LR L P A +SP ++ A+ G
Sbjct: 54 RRRGAHGVRALRPLLLPRASASPSAKTAAGG 84
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 411 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 569
K+D + ++ E QEK K + K ++ VE K +M HT+ ++
Sbjct: 262 KYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEELKKKKMSHTSNTKR 314
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 283 RVSSKASTPAVSVTSTPMKRLCFR 354
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 339 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 458
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 327 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQ-EKNPLPDKDVVAAEKAHQ 503
D EK + +DVA + K GIE D S K T + E N L D + ++
Sbjct: 927 DILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNE 986
Query: 504 NLLDGVEHFDKTQMKHTTTEEKNPL 578
NL + + K++ + ++ N L
Sbjct: 987 NLNERLSKIKKSEARPEEVQDANAL 1011
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +1
Query: 109 RPPALSPALSVFSRSPTESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RV 288
RPP+ +PA++ S P S S P P + P+P + LPP + SP PQ+
Sbjct: 253 RPPS-TPAITAVSSVPRSSPSPA---PAPAARPAS---PSPSLPLPPGRESPSRPQSIAA 305
Query: 289 SSKAS 303
++ AS
Sbjct: 306 AAVAS 310
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 238 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 330
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,616,089
Number of Sequences: 37544
Number of extensions: 528194
Number of successful extensions: 1816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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