Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H04
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 564 EKNPLPPNRSYRSGEGKEQ 620
           EKN LP + SY+SG   EQ
Sbjct: 435 EKNWLPVHTSYKSGLNLEQ 453


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 470 QRRCRSGESPPEPLGR 517
           Q +C  GE+P +P+GR
Sbjct: 51  QLKCALGEAPCDPVGR 66


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 228 SVSDTPSLKDLPKVATDLKS 287
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 470 QRRCRSGESPPEPLGR 517
           Q +C  GE+P +P+GR
Sbjct: 51  QLKCALGEAPCDPVGR 66


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 752 YSQMYLASIAVFNIDVSQI 808
           Y+ + L  + + N+DVSQ+
Sbjct: 457 YNDLILPGVTIQNVDVSQL 475


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 814 QIDLTYINIKYGDTSEI 764
           QIDL +IN   GD  EI
Sbjct: 172 QIDLKHINQNMGDKVEI 188


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 459 GSSPESRCASAGSNQTSQCRRIKTSGSSQWRRLQ 358
           GSS +   +   S+ T +    K   SS WR+L+
Sbjct: 190 GSSGDDLSSEWDSDYTDKSNEKKIPKSSGWRKLR 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,661
Number of Sequences: 438
Number of extensions: 5221
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)