Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H03
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    27   3.6  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.2  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 175 KIWDAQGHGVNRLEDITKVVNTRGKRADQK 264
           K++D  G+G   +E++T V+ + G+R  Q+
Sbjct: 92  KVFDKDGNGYITVEELTHVLTSLGERLSQE 121


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 345 VTFFLTWNYVLSFYQHV 295
           + FF+++NY++  YQH+
Sbjct: 460 IVFFVSYNYIIDSYQHM 476


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 339  FFLTWNYVLSFYQHV 295
            FFL W Y + FY+H+
Sbjct: 1315 FFLCWFYPIKFYKHI 1329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,100
Number of Sequences: 5004
Number of extensions: 32153
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)