Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H02
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   1.2  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   2.1  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   4.9  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   6.5  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   6.5  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 387 ENRENILIELIYVLAITCLSAANVTATRAPRDS 289
           +NR  I+I  +Y++ +TC    N+T   +P ++
Sbjct: 46  KNRVGIIILFLYIMIVTCYVLTNLTPPGSPSET 78


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 624 AWPRSRLWFGWRGTFFILITG 562
           +W  S+LWF +   FFI+ITG
Sbjct: 215 SWIASKLWFRFFILFFIIITG 235


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -3

Query: 303 APRDSRPXKPADRFAGKXCQQXXKXCGRRQEKRRRDGEPKPKAVDXERTGKEKXWKKRET 124
           A  + R  + A+R A +  Q+  +   +RQE+ R+  E +    + E+  +E   +KRE 
Sbjct: 607 AKEEERQRREAERLAEQAAQKALE--AKRQEEARKKREEQRLKREQEKKQQELERQKREE 664

Query: 123 QGAQQ 109
           +  Q+
Sbjct: 665 KQKQK 669


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 45  LCXPXPSFXRGRPSFRPCVPCSVGPLASL 131
           LC P PS  +G P FR   P  +  L SL
Sbjct: 329 LCFPIPSGKKGAPVFRKHFPSILQELNSL 357


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 361 TNLCACNNLPFGSQRXGYESXTRQQAXKACGQICGEXVP 245
           +N   CNNLP   QR   ++   +   K+C   CG+ +P
Sbjct: 789 SNRNECNNLPTPIQRGVSKAGPAKHLGKSCPH-CGQPLP 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,426
Number of Sequences: 5004
Number of extensions: 36480
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)