Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H01
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.072
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.67 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = -1

Query: 589 PXXPPWXGGXPXPPPXXXXPPLXGGGGGXAXXKXPPPPXGXGNXXXGGXPRPPPP 425
           P  P      P P P    PP    GG       PPPP   G    G  P PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGG------PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = -1

Query: 589 PXXPPWXGGXPXPPPXXXXPPLXGGGGGXAXXKXPPPPXGXGNXXXGGXPRPPP 428
           P   P  GG P PPP    PP   G G       PP     G+      P+  P
Sbjct: 752 PPPAPIMGGPPPPPP----PPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 486 PPPPXXXVIXXXGXXPGPPPPA 421
           PPPP   V       P PPPPA
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPA 784



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = -1

Query: 607 PRFRGXPXXPPWXG-GXPXPPPXXXXPPLXGGGG 509
           P   G P  PP  G     PPP    PP    GG
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = -1

Query: 559 PXPPPXXXXPPLXGGGGGXAXXKXPPPPXGXGNXXXGGXPRPP 431
           P PPP          G G +    PPPP    +   G  P PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 610 PPRFRGXPXXPPWXGGXPXPPPXXXXPP 527
           PP   G P  PP     P PPP     P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
 Frame = -1

Query: 607  PRFRGXPXXP-PWXGGXPXPPPXXXXPPLXGGGGGXAXXKXPPPPXGXGNXXXGGXPRPP 431
            P   G P  P P     P P P    PP+     G      P           G  P PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212

Query: 430  P 428
            P
Sbjct: 1213 P 1213



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/62 (27%), Positives = 18/62 (29%)
 Frame = -1

Query: 613  VPPRFRGXPXXPPWXGGXPXPPPXXXXPPLXGGGGGXAXXKXPPPPXGXGNXXXGGXPRP 434
            VP    G P  P    G P  PP    PP+     G      P           G  P P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230

Query: 433  PP 428
             P
Sbjct: 1231 VP 1232


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 487 PPPPXGXGNXXXGGXPRPPPP 425
           PPPP   G       P PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.143    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,951
Number of Sequences: 5004
Number of extensions: 20432
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)