Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G23
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    31   0.29 
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   2.0  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   4.7  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   8.2  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 241 NYYK---FLNNWSMSKLKDFSCAFHGNENMANQKLIYPAATRNQEPILQVLKRFVTYDCA 411
           NY K   +L + S++ LKD +  FH N  +   K     A+  +EPILQ L   +TY CA
Sbjct: 297 NYLKQEPWLAHSSVNSLKDVA-KFHCNITLDKSKRD-DFASLEKEPILQKLNELITY-CA 353

Query: 412 ED 417
            D
Sbjct: 354 HD 355


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 592 IVLVRVYFWLDIPLHNI*CFLKGFRQILLAEILYL 488
           I  + VYF L++P HN   F+  FR+I L  ++ L
Sbjct: 255 IAFLCVYFTLNLPHHNHVSFMTRFRKIDLKGLILL 289


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 372 NGLLVPCCCWIYQLLICH 319
           N  +V  CCW +  L+CH
Sbjct: 463 NPRIVANCCWAFMNLVCH 480


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 235 NLNYYKFLNNWSMSKLKDFSCAFHGNENMANQKLIYPAATRNQEP---ILQVLKRFV 396
           ++N+ KFL +W     K+       +++   ++LIY +  + + P      VL R++
Sbjct: 164 HINFTKFLQDWGSHNEKEMEALQRLSKHKIRKRLIYVSQHKKKMPWSKFNSVLSRYI 220


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 415 DDSPLFLEVASGSGQHLAHFAP 480
           DD   F+E  +GSG+ LA+  P
Sbjct: 177 DDKDAFIEAQTGSGKTLAYLLP 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,151
Number of Sequences: 5004
Number of extensions: 71411
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)