Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G23
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0648 - 19694538-19696569,19697151-19697998                       30   2.8  
03_06_0451 + 34025048-34027099,34028210-34028242                       29   3.8  

>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 226 FFKNLNYYKFLNN-WSMSKLKDFSCAFHGNEN 318
           F +N +Y+  +++ WS    KD  CAF  N N
Sbjct: 278 FLENKSYFVLIDDVWSKQAWKDIQCAFPSNNN 309


>03_06_0451 + 34025048-34027099,34028210-34028242
          Length = 694

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 616 HYGFLEESID-YVYNANMIHLSP----YECTIGLFKNAGCYLKPNALMILYGPFSKDGVI 780
           H G  EE +D +        + P    Y C + L   +GC  +  AL IL  P + DGVI
Sbjct: 453 HSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEAL-ILSMPLTPDGVI 511

Query: 781 HLTVM 795
             T++
Sbjct: 512 WKTLL 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,249,505
Number of Sequences: 37544
Number of extensions: 370383
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)