Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G23
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023830-3|CAE17985.1|  204|Caenorhabditis elegans Hypothetical ...    96   3e-20
AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical ...    33   0.36 
Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical pr...    31   1.4  

>AL023830-3|CAE17985.1|  204|Caenorhabditis elegans Hypothetical
           protein Y26E6A.3 protein.
          Length = 204

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 5/159 (3%)
 Frame = +1

Query: 343 PAATRNQEPILQVLKRFVTYDCAEDDSPLFLEVASGSGQHLAHFAPHFPNIKFQPTEFDE 522
           PAA  N++ IL+VL+RF T            E+ASG+GQH+ HFA   P++ FQPTE + 
Sbjct: 5   PAAESNKDVILEVLRRFAT------SGKKVFELASGTGQHMEHFARALPDVTFQPTEVNG 58

Query: 523 TLLGSIKYYATECPTKNILLPIQLDICTDLVHYG----FLEESIDYVYNANMIHLSPYEC 690
             L SI  Y  +    N+ +P+ +D+      +     F    +D V N NMIH+     
Sbjct: 59  RYLHSIVSYLDQSQFPNVRIPLFIDVAKPFNQWALPADFGPHMVDIVLNINMIHICSTAA 118

Query: 691 TIGLFKNAGCYL-KPNALMILYGPFSKDGVIHLTVMFNL 804
             GLF++A   L + N +++ YGP+++DG  H++   N+
Sbjct: 119 VKGLFQSADLLLHETNGILMTYGPYAEDG--HISPQSNI 155


>AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical
           protein Y36E3A.1 protein.
          Length = 354

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 229 FKNLNYY--KFLNNWSMSKLKDFSCAFHGNENMANQKLIYP 345
           F NL  Y  K L N  + KL+DF+  F+ N+N+  Q L +P
Sbjct: 142 FTNLAIYDLKLLMNMHLLKLQDFTLGFYPNDNVDLQSLHFP 182


>Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical
           protein F28H7.9 protein.
          Length = 366

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 476 HLIFQI*NFSQQNLTKPF*EALNIMQRNVQPKIY 577
           HLIF + N  Q +L   F E +N   +N++ K+Y
Sbjct: 299 HLIFLLSNTDQLDLRTTFGEEMNYSDKNIESKVY 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,299
Number of Sequences: 27780
Number of extensions: 377268
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)