Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G22
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    34   0.023
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    31   0.29 
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   6.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   8.2  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 298 ESPLWPVDGRPPLSATSSYHQAHRNQNLEHFIRNRSLSHYFDNIQILIEPSAPCPGSDIP 477
           + P  P+   PP+  T S   A   QN + ++  +S  HY + + I   PS  CP +   
Sbjct: 262 DPPQTPISMSPPIPPTPSQFSAFMYQNQQSYLSPQS--HYENPLSISSRPSPCCPSTPSS 319

Query: 478 VVAL 489
            V L
Sbjct: 320 AVTL 323


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 624 SQRTQRYGNIELPRTLSELNLEDWFHAKVDSRAMCYRQFST 746
           S+ T++ G+ E+P T S LNLE  F   +  R+ CYR ++T
Sbjct: 228 SKMTEQTGD-EIPETFSFLNLERDFSPALPQRS-CYRTYTT 266


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 518 RDKPSERRGLNVCLLTSLWAWKEGKSMKAW 607
           RDK S   G++ C+LT+L      +SM  W
Sbjct: 110 RDKLSFALGVSTCILTALLVGMAPESMHLW 139


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 465  VGHSCGSVGSYDTITV 512
            +GHSCG +  Y T+ V
Sbjct: 1112 IGHSCGVIKEYSTVVV 1127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,406
Number of Sequences: 5004
Number of extensions: 75165
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)