Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G20
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   7.2  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    28   7.2  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   7.2  

>Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical
           protein T23D8.3 protein.
          Length = 410

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = -1

Query: 569 RWDCETILSTYSNLYNHPKLIEEPK 495
           +WDCE+  + Y+N+YNHP LI+EP+
Sbjct: 285 KWDCESFATQYTNIYNHPTLIKEPR 309


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 441 EHVLRYTSFWIYHDPLRFLRFLY----EFRMVIQVGVSTKNSLAVPSLL 575
           EHVL+ TSF+   DP RF   LY    E    ++VG +T +   V S L
Sbjct: 573 EHVLKSTSFFFLSDP-RFTTTLYTIIKEASQGLRVGSTTLSRQTVSSAL 620


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 441 EHVLRYTSFWIYHDPLRFLRFLY----EFRMVIQVGVSTKNSLAVPSLL 575
           EHVL+ TSF+   DP RF   LY    E    ++VG +T +   V S L
Sbjct: 573 EHVLKSTSFFFLSDP-RFTTTLYTIIKEASQGLRVGSTTLSRQTVSSAL 620


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 441 EHVLRYTSFWIYHDPLRFLRFLY----EFRMVIQVGVSTKNSLAVPSLL 575
           EHVL+ TSF+   DP RF   LY    E    ++VG +T +   V S L
Sbjct: 573 EHVLKSTSFFFLSDP-RFTTTLYTIIKEASQGLRVGSTTLSRQTVSSAL 620


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,725
Number of Sequences: 27780
Number of extensions: 167348
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)