Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G15
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    29   0.67 
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    29   0.67 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   6.2  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.2  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   6.2  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   6.2  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   6.2  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.2  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   8.2  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 647  YVYITSKPKLVEPVSKEFKYMWLS-SKDLNYSQFDSKPINEDECCNTESR*SHRKL*NSP 823
            YVY  S    ++PVS      W S  KD      D+K I E E   +    S R L N+ 
Sbjct: 1185 YVYRISPDYSIKPVSNRPYRSWFSRKKDSGQKHLDNKIITESEAGPSRLELSRRILFNAD 1244

Query: 824  V 826
            V
Sbjct: 1245 V 1245


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 413 LVEMLKKKNIKISIVIDQSGCNEPNDVFIKELLDAGAVIK 532
           ++E L  K+ K+ +++D    N+PN    KEL+D    +K
Sbjct: 434 MLEKLDSKSRKLIVILDPHIKNDPNYFVSKELIDYNYAVK 473


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 695 EFKYMWLSSKDLNYSQFDS 751
           EFK  W+ S +LNY + DS
Sbjct: 914 EFKRTWIHSVNLNYDRHDS 932


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 254 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 379
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 254 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 379
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 254 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 379
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 599 SLKLCRRSNRIYVAXXXXXXXXXXXLHQHLKVPL*RHHLVRCTRTDLLQLKS*YFSFSAF 420
           +L+L R+  ++Y+A              H +V   RH  +R  R DLL  +S Y +  +F
Sbjct: 59  ALELARKGAKVYLAGRNEEKYQKVMKQIHDEV---RHSKIRFLRLDLLDFESVYQAAESF 115


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 254 KSRNTELNDVMVFCKLHLNAYNCFDKLMSFIEAAKHNIKVCM 379
           K  NT++N +M    L  N   CFD++  FI      +K C+
Sbjct: 5   KKINTQVNRIMKNSSLVQNI--CFDRVPLFIPRLSLTVKYCL 44


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +2

Query: 563 HKFCLIDDKVLMTGTLNWGNDRSSD--HW-NY 649
           H F     K L  G ++WG+  S D  HW NY
Sbjct: 109 HMFFQYSPKTLTAGEVHWGHTVSKDLIHWENY 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,772
Number of Sequences: 5004
Number of extensions: 57546
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)