Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G15
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylser...    29   4.4  
U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylser...    29   4.4  
AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical ...    29   4.4  
U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform b protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = +2

Query: 545 EPYTMQ--HKFCLIDDKVLMTGTLNWGNDRSSDHWNYVYITSKPKLVEPVSKEFKY---- 706
           E YT+   H +C +++  L+      G  + S HW       +P+L+E +    +     
Sbjct: 167 EEYTIAVTHNYCSVENLHLVWPKTVKGRPKLSKHWVKRLTEQRPELLEIIKSASEIPLYD 226

Query: 707 MWLSSKDLNYSQFDSKPINEDECCNTESR*SHRK 808
           M  SS D + S   S   +++  C+   R   RK
Sbjct: 227 MNESSSDSSSSSSSSDDSSDESDCDDSGRCGGRK 260


>U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform a protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = +2

Query: 545 EPYTMQ--HKFCLIDDKVLMTGTLNWGNDRSSDHWNYVYITSKPKLVEPVSKEFKY---- 706
           E YT+   H +C +++  L+      G  + S HW       +P+L+E +    +     
Sbjct: 283 EEYTIAVTHNYCSVENLHLVWPKTVKGRPKLSKHWVKRLTEQRPELLEIIKSASEIPLYD 342

Query: 707 MWLSSKDLNYSQFDSKPINEDECCNTESR*SHRK 808
           M  SS D + S   S   +++  C+   R   RK
Sbjct: 343 MNESSSDSSSSSSSSDDSSDESDCDDSGRCGGRK 376


>AF016428-4|ABR92600.1|  504|Caenorhabditis elegans Hypothetical
           protein T05C3.6a protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
 Frame = +2

Query: 548 PYT-MQHKFCLIDDKVLMTGTLNWGNDRSSDHWNYVY----------ITSKPKLVEPVSK 694
           PY  + H    + +     GT NW    SSD+W Y             TSK KLV+  + 
Sbjct: 421 PYARVYHNKYFVTESAAYIGTSNW----SSDYWQYTAGIGIVIRADDFTSKSKLVQQFTS 476

Query: 695 EFKYMWLSSKDLNYSQF 745
            F+  W S+  +    F
Sbjct: 477 VFERDWSSTYTIPLKNF 493


>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
 Frame = +2

Query: 299 LHLNAYNCFDKLMSFIEAAKH-NIKVCMPGIHNVAIQGRLVEMLKKKNIKISIVIDQSGC 475
           LH  A  CF ++   +E+ +H N    +  I N+ I+     + KK  I   I + +  C
Sbjct: 421 LHYLAEKCFYEIRDLLESGQHFNASEFLRKIINL-IETSSCPIRKKHGISYLIELAEHQC 479

Query: 476 NEPNDVFIKELLDA--GAVIKYINTEPYTMQHKFCLIDDKVLMTGTLNWGNDRSSDHWNY 649
            +   + +  LLD     V++    + Y  ++K       + M   L+   +  + H+NY
Sbjct: 480 QKLTLLEVSILLDTLLNQVLELPEIDDYLSENK----SYNISMWCALDNLTNSENHHFNY 535

Query: 650 ---VYITSKPKLVEPVSKEFKYMWLSSKDLNYS 739
               ++  K  + +P S+E + + +  K  N S
Sbjct: 536 DKICWVAVKYLVTKPNSRETRAVEVLEKYFNSS 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,493
Number of Sequences: 27780
Number of extensions: 321189
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)