Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_G14
(1244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 34 0.27
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 31 1.4
05_04_0188 - 18883979-18884250,18885046-18885666,18885762-188858... 31 2.5
02_04_0382 - 22501041-22501279,22501717-22501810 30 4.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.8
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 29 5.8
03_05_1163 - 30847591-30847663,30847909-30848042,30848443-308484... 29 5.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 7.6
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 33.9 bits (74), Expect = 0.27
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -1
Query: 392 PPPXPPQKKXXXGXFXGGGGXFXXXPPP 309
PPP PPQ GGGG F PPP
Sbjct: 10 PPPPPPQHPPPPQAGGGGGGEFYRGPPP 37
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = -3
Query: 687 PPXPXXPXXXGXGRXXX-KXPPPPXPXXXKKKXXKXXPPP 571
PP P P GR PPPP P K + PPP
Sbjct: 3 PPPPQRPSPSRAGRANLFSSPPPPLPNCYDPKHRRPAPPP 42
>05_04_0188 -
18883979-18884250,18885046-18885666,18885762-18885887,
18886007-18886265
Length = 425
Score = 30.7 bits (66), Expect = 2.5
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 392 PPPXPPQKKXXXGXFXGGGG 333
PPP PP KK G GGGG
Sbjct: 30 PPPSPPHKKLWGGGGGGGGG 49
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.9 bits (64), Expect = 4.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 392 PPPXPPQKKXXXGXFXGGGGXFXXXPPP 309
PPP P + GGGG + PPP
Sbjct: 74 PPPSPDYYDPPPSPYYGGGGGYGKPPPP 101
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 5.8
Identities = 18/70 (25%), Positives = 19/70 (27%)
Frame = -3
Query: 780 PXXXPPXPPXXXGGXXXXKXXXXXXXXXXXXPPXPXXPXXXGXGRXXXKXPPPPXPXXXK 601
P PP PP G K PP P + PPPP P
Sbjct: 544 PPPPPPPPPPPSGN----KPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLV 599
Query: 600 KKXXKXXPPP 571
PPP
Sbjct: 600 PSPPPPPPPP 609
Score = 29.5 bits (63), Expect = 5.8
Identities = 16/66 (24%), Positives = 17/66 (25%)
Frame = -3
Query: 768 PPXPPXXXGGXXXXKXXXXXXXXXXXXPPXPXXPXXXGXGRXXXKXPPPPXPXXXKKKXX 589
PP PP PP P G G PPPP P +
Sbjct: 668 PPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGP 727
Query: 588 KXXPPP 571
PP
Sbjct: 728 SAPAPP 733
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = -3
Query: 687 PPXPXXPXXXGXGRXXXKXP-PPPXPXXXKKKXXKXXPPP 571
PP P P G P PPP P K+ PPP
Sbjct: 714 PPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPP 753
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 29.5 bits (63), Expect = 5.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 332 PPPPPKXXPXXXFFGGGXGG 391
PPPPPK P + GG GG
Sbjct: 126 PPPPPKPKPCECTYCGGHGG 145
>03_05_1163 -
30847591-30847663,30847909-30848042,30848443-30848484,
30848613-30848654,30849362-30849461,30849605-30849666,
30851001-30851015,30851098-30851179,30853510-30853694
Length = 244
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 389 PPXPPQKKXXXGXFXGGGGXFXXXPP-PXXFF 297
PP PP GGGG F PP P FF
Sbjct: 186 PPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFF 217
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 7.6
Identities = 18/71 (25%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Frame = -3
Query: 780 PXXXPPXPPXXXGGXXXXKXXXXXXXXXXXXPPXPXX-PXXXGXGRXXXKXPPPPXPXXX 604
P P PP G PP P P G G PPP P
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAP 361
Query: 603 KKKXXKXXPPP 571
+ PPP
Sbjct: 362 RPPGPGPGPPP 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,808,081
Number of Sequences: 37544
Number of extensions: 482957
Number of successful extensions: 1938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3841085160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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