Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G11
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.54 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.7  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    23   2.9  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    23   2.9  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    23   2.9  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    23   2.9  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    23   2.9  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    23   2.9  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    23   2.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +2

Query: 776 PPPPPKXXKXPPPFXGXGDPRXXKXXFPXXPPGXPPPPXP 895
           P P P   + P        P   +   P  PPG PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +3

Query: 723 GQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXG 824
           G PP  + G P G     PP          P+ G
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 870 PXXPPPPPXXXGP 908
           P  PPPPP   GP
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 866 PPGXPPPPXPP 898
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 108 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 149


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 108 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 149


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 108 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 149


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 108 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 149


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 108 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 149


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 108 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 149


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 108 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 149


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 357 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 398


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 357 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 398


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 357 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 398


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 357 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 398


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 357 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 398


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 357 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 398


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 356 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 397


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 341 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 382


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 705 PFFXXXGQPPGXNXGXPXGXFXSPPPPPXKXXKXPPPSXGXG 830
           P+    GQ PG     P   F     PP      PPP+   G
Sbjct: 357 PWVPMRGQVPGSRHIGPLTPFPPRFIPPDMYRLRPPPNPRFG 398


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 752  PVXXFXIPPPPPPK 793
            PV     PPPPPP+
Sbjct: 1852 PVSGSPEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,804
Number of Sequences: 438
Number of extensions: 7583
Number of successful extensions: 34
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)