Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_G10
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741... 31 1.6
07_03_1028 - 23378140-23378802 29 3.7
05_04_0142 - 18372751-18373338 29 4.9
11_06_0012 + 19251085-19251666 29 6.5
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
06_03_0218 + 18219956-18220555 28 8.5
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.5
03_04_0061 - 16949038-16950006 28 8.5
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 517 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 675
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>06_01_0964 -
7417158-7417517,7417596-7417868,7418400-7418810,
7419270-7419347
Length = 373
Score = 30.7 bits (66), Expect = 1.6
Identities = 26/84 (30%), Positives = 39/84 (46%)
Frame = +3
Query: 525 FFHRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSG 704
FF P ++ ++ RS ++ + T + + G SL + LP + Y S P
Sbjct: 94 FFLNDLPGNDFNQLFRSLEKIKTSTTM-----YHKGDSLPSYYISGLPKS-YYSRLFPRQ 147
Query: 705 SVALSHSSRCRYLSSGVGRXLQAG 776
SV L HSS C + S V L+AG
Sbjct: 148 SVHLFHSSYCLHWRSQVPEGLEAG 171
>07_03_1028 - 23378140-23378802
Length = 220
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -1
Query: 860 RXYXXGTQDDSYRI--RRXGRAXXGVRAHSPSLERTTYTRTEIPTA*AMRKRHASRREKG 687
R Y D +YR ++ +A A P+ RTT T ++ R + S +G
Sbjct: 66 RDYHYDDDDYAYRASKKKKQQAAAEQAARMPN-NRTTRPTTRRASSSRSRTKEESHA-RG 123
Query: 686 GQVSGKRQGRNRRAHEGASRG-KRLVSL*SCRVSPPLT 576
G + +R+ ++R+ G R +R ++ RV PP T
Sbjct: 124 GGAAPRRENKDRKDGAGGRRSQRRAPTISGPRVPPPAT 161
>05_04_0142 - 18372751-18373338
Length = 195
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -1
Query: 779 SPSLERTTYTRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL*S 600
S S ++Y T + R E+GG G++QGR R+A A R +RL + +
Sbjct: 37 SGSAASSSYPSTSGSAGSSSSGRRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVA 95
Query: 599 C 597
C
Sbjct: 96 C 96
>11_06_0012 + 19251085-19251666
Length = 193
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 764 RTTYTRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVS 609
RTT T E A R+RH RR+ GG G R R G+ G +V+
Sbjct: 69 RTTATAVEAQQA-LRRRRHGGRRDSGGGAGG-RGSRGGVGDLGSCGGTAIVA 118
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 349 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 504
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 704 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 609
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 725 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 624
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 599 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 715
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,292,145
Number of Sequences: 37544
Number of extensions: 513422
Number of successful extensions: 1559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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