Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G07
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    38   0.001
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    29   0.87 

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +3

Query: 216 SLVVLGXGFHNYHHTFPWXYKTAELGAYSLNLSKLFI 326
           +LV LG G HNYHH FP  Y+   L  Y  + +K+FI
Sbjct: 275 ALVTLGEGNHNYHHAFPNDYRNG-LRWYEYDPTKIFI 310


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 552 LTNNRKRIFNMPYLVLEHFRIDKISSISFVFSSDLPNIVSPYGMASITCPF 400
           ++ N      +P  + E + IDK+  +SF  S +LP    P G + ++  F
Sbjct: 296 VSRNYAMNMTLPESIPEGYEIDKLDWMSFSESLNLPTFNQPSGPSDVSASF 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,259
Number of Sequences: 5004
Number of extensions: 46371
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)