Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G05
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...    39   0.004
U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...    38   0.009
U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical p...    29   4.0  

>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +1

Query: 55  KLGFPHRLTKEDAMKWFQQKYDG 123
           ++G  HR+ KE+ +KWFQQKYDG
Sbjct: 157 RIGPSHRVDKEETIKWFQQKYDG 179


>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = +1

Query: 55  KLGFPHRLTKEDAMKWFQQKYDG 123
           ++G  HR+ +E+++KWFQQKYDG
Sbjct: 157 RVGPSHRVEREESIKWFQQKYDG 179


>U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical
           protein T22F3.8 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 153 ILLCFAIKYDTIIFLLEPLH-SIFLCEAVGKSQLFTKS*GIPL*XDRXW 10
           + LCF I  D I F+ EP+   IF   +VG S LF  S G+     R W
Sbjct: 329 VRLCFGIISDKIQFISEPVKIQIFNTISVGGSGLFFASIGLIPMEYRGW 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,153
Number of Sequences: 27780
Number of extensions: 179344
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)