Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G02
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    31   0.28 
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   3.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   3.5  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   8.1  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 374 SMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPNN 240
           S+S  T L  P+   +T S+  + +++  T  +F SSGL SGP N
Sbjct: 548 SVSSETTLVKPS---STSSYIDTTNNVLKTNSSFKSSGLTSGPRN 589


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 520 EMILSSRMMRIKEKEQGSASRMRMKIMKKVNPRAKKR 630
           E +L+ R  R+KE+ +    +   K  KK   R KK+
Sbjct: 130 EALLAERKQRLKEQREKKEQKKEQKKEKKTERRKKKK 166


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 404 RVNV-TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMAST 285
           R NV T ++ N + +   + +PT +T TGS ++  S M +T
Sbjct: 57  RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 250 PDAKPDELNVIQVEAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLXS 411
           P +KP + N +  +   LQ + KLP   L VGE       I+ P+  V+ T  S
Sbjct: 355 PVSKPSKPNTLTEDEKPLQ-STKLPGNSLTVGELYQEPKSIQLPELSVSRTTYS 407


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 422 PRXPEXRVNVTGASGNSMSRRTCLDSPTFNTATG 321
           PR    RV + G S  SMS  T +DS  FN A+G
Sbjct: 425 PRDVAERVAL-GLSKPSMSSDTMIDSRLFNQASG 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,200
Number of Sequences: 5004
Number of extensions: 46123
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)