Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G02
         (873 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC054868-1|AAH54868.1|  178|Homo sapiens nucleophosmin/nucleopla...    35   0.33 
BC041067-1|AAH41067.1|  178|Homo sapiens nucleophosmin/nucleopla...    35   0.33 
AY049737-1|AAL12172.1|  178|Homo sapiens nucleophosmin/nucleopla...    35   0.33 
AF081280-1|AAC31609.1|  178|Homo sapiens nucleoplasmin-3 protein.      35   0.33 
AF079325-1|AAD51496.1|  178|Homo sapiens nucleophosmin/nucleopla...    31   5.5  

>BC054868-1|AAH54868.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin, 3 protein.
          Length = 178

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 133 AFFXGVTLSSSHQSXXWXPXAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ-E 309
           +FF G  LS   +S  +    + E    + L +    L   AK DE NV++V A +   +
Sbjct: 36  SFFFGCELSGHTRSFTFK--VEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARNHDHQ 92

Query: 310 AVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLXSG 414
            + +PVA LK+     + LD      PVTF L SG
Sbjct: 93  EIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSG 127


>BC041067-1|AAH41067.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin, 3 protein.
          Length = 178

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 133 AFFXGVTLSSSHQSXXWXPXAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ-E 309
           +FF G  LS   +S  +    + E    + L +    L   AK DE NV++V A +   +
Sbjct: 36  SFFFGCELSGHTRSFTFK--VEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARNHDHQ 92

Query: 310 AVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLXSG 414
            + +PVA LK+     + LD      PVTF L SG
Sbjct: 93  EIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSG 127


>AY049737-1|AAL12172.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin 3 protein.
          Length = 178

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 133 AFFXGVTLSSSHQSXXWXPXAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ-E 309
           +FF G  LS   +S  +    + E    + L +    L   AK DE NV++V A +   +
Sbjct: 36  SFFFGCELSGHTRSFTFK--VEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARNHDHQ 92

Query: 310 AVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLXSG 414
            + +PVA LK+     + LD      PVTF L SG
Sbjct: 93  EIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSG 127


>AF081280-1|AAC31609.1|  178|Homo sapiens nucleoplasmin-3 protein.
          Length = 178

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 133 AFFXGVTLSSSHQSXXWXPXAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ-E 309
           +FF G  LS   +S  +    + E    + L +    L   AK DE NV++V A +   +
Sbjct: 36  SFFFGCELSGHTRSFTFK--VEEEDDAEHVLALTMLCLTEGAK-DECNVVEVVARNHDHQ 92

Query: 310 AVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLXSG 414
            + +PVA LK+     + LD      PVTF L SG
Sbjct: 93  EIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSG 127


>AF079325-1|AAD51496.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin3 protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 133 AFFXGVTLSSSHQSXXWXPXAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ-E 309
           +FF G  LS   +S  +    + E    + L +    L   AK DE  V++V A +   +
Sbjct: 36  SFFFGCELSGHTRSFTFK--VEEEDDADDVLALTMLCLTEGAK-DECIVVKVVARNHDHQ 92

Query: 310 AVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLXSG 414
            + +PVA LK+     + LD      PVTF L SG
Sbjct: 93  EIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSG 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,990,391
Number of Sequences: 237096
Number of extensions: 1898761
Number of successful extensions: 3456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3440
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)