Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_G02
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.91 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.91 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 347 SPTFNTATGSFTASC-SDMASTCITFNSSGLASGPNN 240
           SP+   + GSFTA C S++ ST  +  +  +A  P N
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 347 SPTFNTATGSFTASC-SDMASTCITFNSSGLASGPNN 240
           SP+   + GSFTA C S++ ST  +  +  +A  P N
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 646 PKAKLHRPRRMPRNEQTAWRPILG*SY 726
           P   +H P   P N Q A + I+G  Y
Sbjct: 457 PTRYIHEPWNAPLNVQRAAKCIIGKDY 483


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 225 RHSSSIVRSRCQTR*IKCDTGG 290
           +H SS   + C    ++C TGG
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGG 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,163
Number of Sequences: 438
Number of extensions: 3377
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)