Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F24
(953 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 107 3e-24
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 54 2e-08
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 39 0.001
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 36 0.006
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.008
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 34 0.026
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.034
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 33 0.045
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.045
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 33 0.078
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.10
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 32 0.14
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.24
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 31 0.24
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.32
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.42
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.42
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 30 0.42
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 30 0.42
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.97
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 28 2.2
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 6.8
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 107 bits (256), Expect = 3e-24
Identities = 41/80 (51%), Positives = 51/80 (63%)
Frame = +1
Query: 70 VAMWSWDVECDTCAICRVQVMDACLRCQXESKKDSYGKQDCVVVWGECNHSFHFCCMSLW 249
VA+W WD+ D CAICR +MD C+ CQ + DS Q+C V WG CNH+FHF C+S W
Sbjct: 29 VALWQWDIVVDNCAICRNHIMDLCIECQANT--DSAAAQECTVAWGTCNHAFHFHCISRW 86
Query: 250 VKQNNRCPLCQQEWSIQRMG 309
+ N CPL +EW QR G
Sbjct: 87 LNTRNVCPLDNREWEFQRYG 106
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 70 VAMWSWDV-ECDTCAICRVQVMDACLRCQXESKKDSYGKQDCVVVWGECNHSFHFCCMSL 246
+A W+WD + D C ICRV C +C +C +VWG+C H FH C+
Sbjct: 11 IANWTWDTPKDDVCGICRVPFDGCCPQCTSPG-------DNCPIVWGKCKHIFHAHCIQN 63
Query: 247 WVK---QNNRCPLCQQEWSI 297
W+ +CP+ +Q + +
Sbjct: 64 WLATSGSQGQCPMDRQTFVV 83
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 205 GECNHSFHFCCMSLWVKQNN--RCPLCQQEWS 294
G C H FH C+ W K +N RCPLC+ ++
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFT 1608
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 36.3 bits (80), Expect = 0.006
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQQEW 291
C H FH C+ W + N CPLC+ E+
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTEF 82
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 DACLRCQXESKKDSYGKQDCVVVWGECNHSFHFCCMSLWVKQ-NNRCPLCQ 282
D+CL C ++Y D C H FH C+ W+ NN CPLC+
Sbjct: 764 DSCLICL-----ETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 34.3 bits (75), Expect = 0.026
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQQ 285
C H HF C+ W+++ CP+C++
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 33.9 bits (74), Expect = 0.034
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 208 ECNHSFHFCCMSLWV-KQNNRCPLCQ 282
+CNH FH C+ W+ N CPLC+
Sbjct: 543 QCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.5 bits (73), Expect = 0.045
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 208 ECNHSFHFCCMSLWVKQNNRCPLCQ 282
EC H F + C++ W + + CPLC+
Sbjct: 270 ECGHIFCWSCINGWTSKKSECPLCR 294
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.5 bits (73), Expect = 0.045
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQQE 288
C H++ + C+ W+K++ CP C+Q+
Sbjct: 100 CGHTYCYECLLNWLKESKSCPTCRQK 125
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 32.7 bits (71), Expect = 0.078
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 169 DSYGKQDCVVVWGECNHSFHFCCMSLW-VKQNNRCPLCQQE 288
+S+ K D VV C H FH C++ W V + CP C E
Sbjct: 326 ESFTKGDKVVAL-PCKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMGK*STLCIKSHEIKKQICXI 366
C H+FH C+ W N+ CP+C+ +Q S + ++ IC I
Sbjct: 227 CQHTFHCPCLQKW--GNSSCPVCRYTQKVQSSEFQSKCTVCCYDKDLWICLI 276
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 31.9 bits (69), Expect = 0.14
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMG 309
C H F C+ W++ + CPLC++E + +G
Sbjct: 127 CGHIFGKNCLQKWLENHCTCPLCRKEVPHETVG 159
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.1 bits (67), Expect = 0.24
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQ 282
C H FH C+ W++ N C +C+
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAICR 437
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 31.1 bits (67), Expect = 0.24
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQ 282
C H + C+ W+K ++ CP+C+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPMCK 1130
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 30.7 bits (66), Expect = 0.32
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 196 VVWGECNHSFHFCCMSLWVKQNNRCPLC 279
V++ C+H H C +++ N RCP C
Sbjct: 285 VIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.3 bits (65), Expect = 0.42
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Frame = +1
Query: 199 VW--GECNHSFHFCCMSLW----VKQNN----RCPLCQ 282
+W G C H FH C+ W ++Q N RCP CQ
Sbjct: 210 IWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQ 247
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 30.3 bits (65), Expect = 0.42
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQ 282
C+H +H C+ W++ + CP+C+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCR 670
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.42
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 211 CNHSFHFCCMSLWV-KQNNRCPLCQQEW 291
C H FH C+ W+ CPLC +++
Sbjct: 223 CEHVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 30.3 bits (65), Expect = 0.42
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 211 CNHSFHFCCMSLW-VKQNNRCPLCQQ 285
C+H FH C+ + +K ++ CPLC+Q
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPLCKQ 542
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 29.1 bits (62), Expect = 0.97
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 211 CNHS-FHFCCMSLWVKQNNRCPLCQQ 285
C H F + C+ W+ Q+ CP+C++
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKR 62
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 144 KTCVHYLHAANSAS---ITFNIPTPHCNKHSISSNV 46
K C++ LH+ S++ FNIP C K +S+N+
Sbjct: 934 KFCIYMLHSTLSSAQQQSVFNIPPKGCRKIVLSTNI 969
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 211 CNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMGK 312
C+H+F C+ +++++ CP C+ R+ K
Sbjct: 44 CSHTFCSFCIRDYLREHPMCPACRAPEQESRLRK 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,606
Number of Sequences: 5004
Number of extensions: 39727
Number of successful extensions: 163
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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