Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F24
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.1  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -1

Query: 362 LQICFFISCDLIQSVLYFPIRCMDHSCWQSGHLLFCFTHRDMQQKWKLWLHSPQTTTQSC 183
           +++    SC +  ++ YFP   MD          F +T RD++ KW   L S   + +  
Sbjct: 130 IRLTITASCPM--NLQYFP---MDRQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEVE 184

Query: 182 FPYESFLLSXWHRRHASI 129
            P   F +    +RH++I
Sbjct: 185 LP--QFRVLGHRQRHSTI 200


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 274 AGIYCSVLPTETCSRNGSYGYTRPKPPHNPASRMSPSCSXPG 149
           AG + ++L T    +N +     P PP++P S     CS  G
Sbjct: 76  AGCHSNLLSTSPSGQNKAVA---PYPPNHPLSGSKHLCSICG 114


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 274 AGIYCSVLPTETCSRNGSYGYTRPKPPHNPASRMSPSCSXPG 149
           AG + ++L T    +N +     P PP++P S     CS  G
Sbjct: 76  AGCHSNLLSTSPSGQNKAVA---PYPPNHPLSGSKHLCSICG 114


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 142 DMRPLLARGK*RKYHIQHPNSTLQQAFHFFKCQ 44
           D  PL+      + H QHP+   QQ  H  + Q
Sbjct: 159 DSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQ 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,971
Number of Sequences: 438
Number of extensions: 3426
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)