Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F23
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 120 3e-28
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 117 2e-27
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 44 4e-05
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 31 0.29
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 31 0.29
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 27 3.5
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 27 4.7
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 6.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 6.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 6.1
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 8.1
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 120 bits (289), Expect = 3e-28
Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Frame = +2
Query: 188 EDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLHEYLPVLGLEQFCNASVA 367
+D KVN+ VGAYRD+ GKPW+LP V+K K + + HEYLP+ GL +F A+
Sbjct: 26 QDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAE 85
Query: 368 MLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNK-HLKYD--TFYYSTPTWENHHLVF 538
+L + ++ + +Q +SGTG + A F+ ++K+ Y S PTW H ++
Sbjct: 86 VLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHTGAHVYISNPTWPVHRTLW 145
Query: 539 VNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPE 643
G T +Y YWDAK R D++G + +KSAPE
Sbjct: 146 EKLGVTVD-TYPYWDAKNRSFDYEGMLSTIKSAPE 179
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/64 (50%), Positives = 41/64 (64%)
Frame = +3
Query: 624 TSRALRXNAVILLHACAPNPTGIDPTREQWVKIADVMEERKLXPFFDSAYKGSRXGDLXG 803
T ++ ++ LLHACA NPTGIDPTREQW+ I + + RK FD AY+G GDL
Sbjct: 173 TIKSAPEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSRKHLVVFDIAYQGFASGDLNR 232
Query: 804 NPWA 815
+ WA
Sbjct: 233 DSWA 236
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 117 bits (282), Expect = 2e-27
Identities = 63/157 (40%), Positives = 88/157 (56%)
Frame = +2
Query: 173 TDFLLEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLHEYLPVLGLEQFC 352
T+ +D K+NLG G YRD+ GKP+VLP VR+ E +L + + L EY P+ G+ F
Sbjct: 55 TEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLS-QKLDKEYAPITGIPSFR 113
Query: 353 NASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHL 532
+ + G+ +I + Q +SGTG L + A FL T Y S PTW NH
Sbjct: 114 VQATKLAYGDVYESI-KDRLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKN 172
Query: 533 VFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPE 643
VF +G T +SY+Y+D TRG+D G + DL SAP+
Sbjct: 173 VFSRAGLT-VKSYKYYDPATRGLDIKGMLSDLTSAPD 208
Score = 64.1 bits (149), Expect = 3e-11
Identities = 28/65 (43%), Positives = 39/65 (60%)
Frame = +3
Query: 648 AVILLHACAPNPTGIDPTREQWVKIADVMEERKLXPFFDSAYKGSRXGDLXGNPWAGRVL 827
++ILLHACA NPTG+DPT+ QW I M+++ D AY+G GD + +A R+
Sbjct: 210 SIILLHACAHNPTGVDPTKAQWDDILKTMQKKNHFALLDMAYQGFASGDFARDAYATRLF 269
Query: 828 XQSRV 842
S V
Sbjct: 270 ASSNV 274
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 43.6 bits (98), Expect = 4e-05
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +2
Query: 254 WVLPIVRKMEKQLAADETLLHEYLPVLGLEQFCNASVAML-LGEDSPAIAAGKAFGVQVL 430
W +VR + K+L + L HEY P ++ S+A L L D+P I AG V ++
Sbjct: 106 WSQQVVRVLVKRLNISDLLYHEYKPKFEVDTLNATSLASLPLDIDAPCIRAGLEPEVALI 165
Query: 431 ---SGTGGLRVGAEFLNKHLKYDTFY-YSTPTWENH 526
SG+ G+ FL K KY Y Y TP + NH
Sbjct: 166 NHSSGSTGVPKSMPFLMK--KYALGYDYGTPEFMNH 199
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 351 VMRLWLCSLVRIVLPSPLEKLLVCKSCPGLVVCASAQSSSTSILNMIHSTTPRL 512
++ ++CS ++ LP+PL L C S V + S LN++ + P L
Sbjct: 393 ILSAFICSPPQLPLPNPLRMYLPCPSLNSTEVSVITLAPQHSFLNIVINLNPAL 446
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 823 TRPAHGFPXRSPXREPLYALSKNGXNLRSSMTSAIFTHCSLVGSMPVGLGAHA 665
T AHG ++ EP LS++ + S+ S +F HC +V V A
Sbjct: 1482 TLAAHGNVEKAESFEPPVILSQSDVKIPDSLLSEVFDHCRIVSLYTVSASQDA 1534
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 299 LLPAVFPSYERWAVPMVYHFHLCMLQLLN*LYFEKYPQVKSLFNKNTSIG-GPCSTPWNR 123
+LP + P Y+ W VP Y F C ++ + + K + ++F+K T++ P N
Sbjct: 155 VLPIMIPVYKWWQVP--YFFVGC--KIYDWVAGSKNLRASTIFSKETTVAIAPMLDDSNL 210
Query: 122 EAICFF 105
+A C +
Sbjct: 211 KASCVY 216
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 203 FEKYPQVKSLFNKNTSIGGPCSTPWNREA 117
FEKY + + + IG CS WN E+
Sbjct: 311 FEKYLSEQGITKEKQKIGVLCSKRWNEES 339
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 372 SLVRIVLPSPLEK--LLVCKSCPGLVVCASAQSSSTSILNMIHST 500
S+++ VL P+ LL+CK C ++ C + + ++ ++ +
Sbjct: 958 SVLKRVLDGPMRTKFLLLCKRCKAVLCCRVSPAQKADVVQLVRES 1002
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 276 RWKNSWQQMKPYCMNTFLC*V--W-SSFVMRLWLCSLVRIVLP---SPLEK 410
RW W + KP C+ T L + W S F+ + SL+R++ +P+EK
Sbjct: 245 RWPTIWGEDKPRCLYTSLYHIFKWCSDFISKPPTKSLIRLLAEHTLNPVEK 295
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 408 KLLVCKSCPGLVVCASAQSSSTSILNMIHSTT 503
++LVC++ GL C ++ S + M+ STT
Sbjct: 890 QVLVCENLVGLFSCVFVKNKLQSKIRMLQSTT 921
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 796 RSPXREPLYALSKNGXNLRSSMTSAIFTH 710
R+P PL+ L N L++S+++ +F H
Sbjct: 58 RNPLNVPLFELPVNSLELQNSVSNDMFKH 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,604,329
Number of Sequences: 5004
Number of extensions: 80715
Number of successful extensions: 253
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -