Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F23
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 157 1e-38
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 122 3e-28
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 66 5e-11
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 30 2.8
06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119 29 3.7
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 6.5
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 29 6.5
05_05_0392 + 24629528-24630442 28 8.6
03_02_0699 + 10513013-10513092,10513518-10513599,10513710-105138... 28 8.6
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 157 bits (380), Expect = 1e-38
Identities = 78/145 (53%), Positives = 93/145 (64%)
Frame = +2
Query: 206 KVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLHEYLPVLGLEQFCNASVAMLLGED 385
KVNLGVGAYR E GKP VL +VR+ E+ L + + + EYLP+ GL F S ++ G D
Sbjct: 33 KVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSRVKEYLPITGLADFNKLSAKLIFGAD 92
Query: 386 SPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPR 565
SPAI + VQ LSGTG LRVG EFL +H T Y PTW NH VF +G T R
Sbjct: 93 SPAIQENRVATVQCLSGTGSLRVGGEFLARHYHERTIYIPQPTWGNHPKVFTLAGLT-VR 151
Query: 566 SYRYWDAKTRGIDFDGFIEDLKSAP 640
SYRY+D TRG+DF G +EDL SAP
Sbjct: 152 SYRYYDPATRGLDFQGLLEDLGSAP 176
Score = 71.3 bits (167), Expect = 9e-13
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +3
Query: 648 AVILLHACAPNPTGIDPTREQWVKIADVMEERKLXPFFDSAYKGSRXGDL 797
A++LLHACA NPTG+DPT +QW +I +M + L PFFDSAY+G G L
Sbjct: 179 AIVLLHACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSL 228
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 122 bits (295), Expect = 3e-28
Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 9/219 (4%)
Frame = +2
Query: 173 TDFLLEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLHEYLPVLGLEQFC 352
T+ L D +KVN+GVGAYRD++GKP VL VR+ E+++A + EYLP+ G +
Sbjct: 48 TEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRIAGSMNM--EYLPMGGSIKMI 105
Query: 353 NASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHL 532
S+ + GE+ I + VQ LSGTG R+ A+F + L Y TPTW NHH
Sbjct: 106 EESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRFLPDSQIYIPTPTWANHHN 165
Query: 533 VFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPE-------XCRHTAARMRPQSHRH 691
++ ++ + +++ Y+ ++RG+DF G ++D+K+AP+ C H + P +
Sbjct: 166 IWRDAQVPQ-KTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHACAHNPTGVDPSEEQW 224
Query: 692 R--PHQGTVGENS*CHGGAQVVPVLRQRVQGFAXGRPXR 802
R HQ V ++ P QGFA G P R
Sbjct: 225 REISHQFKVKKH---------FPFFDMAYQGFASGDPER 254
Score = 62.5 bits (145), Expect = 4e-10
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +3
Query: 657 LLHACAPNPTGIDPTREQWVKIADVMEERKLXPFFDSAYKGSRXGD 794
LLHACA NPTG+DP+ EQW +I+ + +K PFFD AY+G GD
Sbjct: 206 LLHACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGD 251
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 65.7 bits (153), Expect = 5e-11
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +2
Query: 428 LSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDF 607
LSGTG R+ A+F + L Y TPTW NHH ++ ++ + R++ Y+ ++RG+DF
Sbjct: 68 LSGTGACRLFADFQRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQ-RTFTYYHPESRGLDF 126
Query: 608 DGFIEDLKSAP 640
G ++D+K+AP
Sbjct: 127 AGLMDDIKNAP 137
Score = 60.9 bits (141), Expect = 1e-09
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +3
Query: 657 LLHACAPNPTGIDPTREQWVKIADVMEERKLXPFFDSAYKGSRXGD 794
LLHACA NPTG+DPT EQW +I+ + + PFFD AY+G GD
Sbjct: 143 LLHACAHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGD 188
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 396 MAGLSSPRSIATDALQNCSRPNTGRYSCSKVSSAASCFSILRT-MGSTHGLPFSSLY 229
M GLS SI PN R+S V +A+ FSIL T + P S+LY
Sbjct: 319 MLGLSYAASIRVGNELGAGHPNVARFSVFVVITASVAFSILATILVLVLRYPLSTLY 375
>06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119
Length = 393
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 419 VQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVN 544
VQ L +GG+++GA LN + + F+ T T + VF+N
Sbjct: 353 VQALEASGGVKIGAG-LNVAYQREVFFIRTSTSNQIYAVFLN 393
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +2
Query: 353 NASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFL--NKHL--KYDTFY----YST 508
+ + A+ GE P +A G G + +G + +G + +++ +YD F+ YS+
Sbjct: 2 SGAAAIATGEGGPLVAVGLGGGNDLHNGDAAVVLGKTWCWASRYPGDQYDRFWWQLGYSS 61
Query: 509 PTWEN 523
PTW+N
Sbjct: 62 PTWKN 66
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 739 SSMTSAIFTHCSLVGSMPVGLGAHACSSMTAXFRSALEVFDETVEVYAPG 590
+S+ + +F+ CS + S+P L H SS+ + S+ E D + PG
Sbjct: 1377 TSLKTLVFSECSYLRSLPATL--HQISSLKSLHLSSCESIDSLPHLGLPG 1424
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 462 SAPTRRPPVPDKTCTPKAFPAAMAGLSSPRSIAT 361
S P R+PPVP + C +A P +SP S T
Sbjct: 217 SGPQRKPPVPPRPC-GRASPRRAQETNSPASSTT 249
>03_02_0699 +
10513013-10513092,10513518-10513599,10513710-10513826,
10514125-10514187,10514595-10514699,10514777-10514827,
10515002-10515322,10515423-10515629,10515708-10516001
Length = 439
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 657 LLHACAPN-PTGIDPTREQWVKIADVMEERKLXPFFDSAY 773
++ C+PN PTG +R+Q K+ ++ +DSAY
Sbjct: 214 IIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDSAY 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,866,643
Number of Sequences: 37544
Number of extensions: 577280
Number of successful extensions: 1864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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