Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F22
         (1116 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    31   0.38 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    28   2.0  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   4.7  

>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 163 IQVIVXDCLNNXEFENAXFLAERLYAEVGSXEAAXLL 273
           ++ ++  C++N  ++N+ F +ERL+A   S E+  LL
Sbjct: 5   LKCLIWYCIDNQNYDNSIFYSERLHAIEDSNESLYLL 41


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 115 IWKVFIYSKKMIVQEPIQVIVXDCL 189
           +W++ +Y+KK +V+  + V V  C+
Sbjct: 726 VWRIRVYAKKHVVKHGVSVCVSHCI 750


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 243 FRIQSFCQKXSVFEFXIVEAIPNDNLDRFLHNHLFTVNKYFPD 115
           FRI   C   ++F F +V  I   N +    N L+ +  YF D
Sbjct: 357 FRIMVLCGVVTIFSFSLVALIFCSNTNNNSTNKLWKIRWYFLD 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,474
Number of Sequences: 5004
Number of extensions: 26057
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 591678054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)