Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F20
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       35   0.081
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   1.7  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   2.3  
09_02_0603 - 11150739-11150746,11150791-11151340                       29   4.0  
07_01_0080 + 587674-588510                                             29   4.0  
05_01_0142 - 940421-940701,941262-941574                               29   7.1  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 35.1 bits (77), Expect = 0.081
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = -2

Query: 824 GPK*XPPXKGGXPPPXGXXXXXXPPPXGGXXRXGGPFXXAPK 699
           GP   PP KG  PPP        PPP  G  + GGP    PK
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPG-GKKGGPPPPPPK 383



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 809 PPXKGGXPPPXGXXXXXXPPPXG 741
           PP KG  PPP        PPP G
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKG 361


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
 Frame = -2

Query: 872  GGGPQXXXXGXFXKXGGPK*XPPX---KGGXPPPXG-XXXXXXPPPXGGXXRXGGP 717
            GG P     G     GGP   PP    +GG PPP         PPP  G    GGP
Sbjct: 1146 GGVPPPPPVGGL---GGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP 1198



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
 Frame = +2

Query: 728  PXPXPXGGGXXXXXTPPXA----GXXPLXXXGXIXAPPPXKKXXXXXFGAHPPP 877
            P P P GG       PP A    G  P    G +  PPP  +      G   PP
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPP 1202


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +2

Query: 746 GGGXXXXXTPPXAGXXPLXXXGXIXAPPPXKKXXXXXFGAHPPP 877
           GGG      PP AG  P        APPP         G HPPP
Sbjct: 268 GGGQVPAAPPPPAGPPP-------PAPPPLPPSHHHHHGHHPPP 304



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +2

Query: 722 PXPXPXPXGGGXXXXXTPPXAGXXPLXXXGXIXAPPPXKKXXXXXFGAHPPP 877
           P P P   G G      PP A        G    PPP         G  PPP
Sbjct: 336 PAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPP 387


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +1

Query: 721 PPXLXXPPXGGGXFXLXXPXGGGXPPFXGGXYXGPPXXXKXPFXXXWGPPPPXL 882
           PP    PP   G   +  P  G  PP   G +  PP   + P      PPPP L
Sbjct: 39  PPFGFPPPPPPGSTFVPLPQSGVPPPPPLGSFFVPPPQSRVP------PPPPQL 86


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -2

Query: 863 PQXXXXGXFXKXGGPK*XPPXKGGXPPPXGXXXXXXPPP 747
           P+    G F +   P   PP  G  PPP        PPP
Sbjct: 80  PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPP 118


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 809 PPXKGGXPPPXGXXXXXXPPPXGGXXRXGG 720
           PP  G  PP  G       PP GG  + GG
Sbjct: 62  PPPPGAYPPQHGYPQPGGYPPPGGYPQHGG 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,854
Number of Sequences: 37544
Number of extensions: 322387
Number of successful extensions: 589
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)