Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F19
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 87 4e-18
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 82 9e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 81 2e-16
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 77 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 4e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 76 8e-15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 76 8e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 74 3e-14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 72 1e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 71 2e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 70 5e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 62 1e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 60 3e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 59 7e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 58 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 57 3e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 9e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 55 1e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 51 2e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 4e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 42 1e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.006
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 3.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 3.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 6.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 7.9
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 86.6 bits (205), Expect = 4e-18
Identities = 40/104 (38%), Positives = 66/104 (63%)
Frame = +3
Query: 393 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQ 572
++ GL + V+ LG+ PT+IQ +A+PAI +G + + A+TG GKT+A+LLP+ +
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 573 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSINI 704
HI + +P E P+A+++TP RELA+QI + + +NI
Sbjct: 479 HIKDQRPLKTGE--GPIAIIMTPTRELAVQIFRECKPFLKLLNI 520
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 82.2 bits (194), Expect = 9e-17
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Frame = +3
Query: 396 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQ- 572
F D+ L +N+ K +K++GF T IQ +++P +L G + + A+TG GKTLA+L+P I+
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 573 -HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIA----QSININVTTFNRRQNE 737
+ L++KP N ++I+P RELALQI VA+ + Q+ I + NRR
Sbjct: 151 LYALKFKPR-----NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEA 205
Query: 738 KKNVKPSN 761
K VK N
Sbjct: 206 DKLVKGVN 213
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 81.4 bits (192), Expect = 2e-16
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 354 NANKKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETG 533
N N + KTF+++G+ D L + + LGF PT IQ +A+P +LN + + A+TG
Sbjct: 34 NNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTG 93
Query: 534 CGKTLAYLLPIIQHILEWKPTIQEEFNSP-LAVVITPNRELALQIGEVAQTIAQSINI 704
GKT A+ LP+IQ + W SP AVV+ P RELA QI E + I SI +
Sbjct: 94 SGKTAAFALPVIQEL--WNNP------SPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 77.4 bits (182), Expect = 2e-15
Identities = 43/107 (40%), Positives = 62/107 (57%)
Frame = +3
Query: 393 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQ 572
TFE+ G + ++K VK LGF PT IQ +A P ++G + V + TG GKTL+Y LP I
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 573 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVT 713
HI +P + + P+ +V+ P RELA+QI + +S I T
Sbjct: 183 HI-NAQPLLSPG-DGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 76.6 bits (180), Expect = 4e-15
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Frame = +3
Query: 363 KKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGK 542
K ++ P + +E+ GL ++KV+K + + P++IQ A+P +L + + AETG GK
Sbjct: 240 KGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGK 299
Query: 543 TLAYLLPIIQHILEWKPTIQEEFN-SPLAVVITPNRELALQIGEVAQTIAQSININ-VTT 716
T A+++P+I I + P + + P AVV+ P RELA QI A+ + V+
Sbjct: 300 TAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSV 359
Query: 717 FNRRQNEKKNVKPSN*AQ*HINHNARSLQ*LXTXGXTRSQCT 842
E+++ + S A + R L L SQCT
Sbjct: 360 VGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCT 401
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 75.8 bits (178), Expect = 8e-15
Identities = 40/121 (33%), Positives = 63/121 (52%)
Frame = +3
Query: 390 KTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPII 569
KTF D L L + + F PT++Q++ +P L G + V A TG GKT AYL+PI+
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 570 QHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTFNRRQNEKKNV 749
+ +L+ K I E A+++ P RELA Q+ V + + + ++ N N V
Sbjct: 74 ELLLKQK-QIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTV 132
Query: 750 K 752
+
Sbjct: 133 Q 133
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 75.8 bits (178), Expect = 8e-15
Identities = 37/103 (35%), Positives = 64/103 (62%)
Frame = +3
Query: 396 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQH 575
F+ +GL L++ + GF PT IQ K +P +L G + V A TG GKT A+++P+I+H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 576 ILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSINI 704
+ K T+ ++ A++++PNRELALQ +V + ++ ++
Sbjct: 131 L---KSTLAN--SNTRALILSPNRELALQTVKVVKDFSKGTDL 168
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 73.7 bits (173), Expect = 3e-14
Identities = 43/129 (33%), Positives = 73/129 (56%)
Frame = +3
Query: 324 SKGDYFIIHGNANKKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNG 503
+K + F G+ K T + +F+ + L ++K + +LGF +PT IQ K +P L G
Sbjct: 238 AKKNAFFAEGDKEKSMMTTTH-SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG 296
Query: 504 HNTVITAETGCGKTLAYLLPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQT 683
+ V A TG GKT A+++PI++ +L ++P ++ + +++ P RELA+Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLL-YRP---KKVPTTRVLILCPTRELAMQCHSVATK 352
Query: 684 IAQSININV 710
IA +I V
Sbjct: 353 IASFTDIMV 361
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 71.7 bits (168), Expect = 1e-13
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Frame = +3
Query: 351 GNANKKEETPVYRKTFEDIGLKDNLVKVVKD-LGFTLPTAIQTKAVPAILN--GHNTVIT 521
G + P+ F + L L + + + + PTAIQ+ +PA+LN + I
Sbjct: 125 GTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIE 184
Query: 522 AETGCGKTLAYLLPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQS-- 695
A+TG GKTLAYLLPI+Q ++ + + AV++ P REL QI VA + +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 696 ----ININVTTFNRRQNEKKNVK 752
++ NV ++++EK ++
Sbjct: 245 SHWIVSCNVIGGEKKKSEKARIR 267
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 70.9 bits (166), Expect = 2e-13
Identities = 39/106 (36%), Positives = 61/106 (57%)
Frame = +3
Query: 387 RKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPI 566
RK+F D+G+ L+ +K L PT IQ + IL G N + A+TG GKT A+ LPI
Sbjct: 6 RKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPI 65
Query: 567 IQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSINI 704
I+ +W ++ + A+++TP RELA+QI E + ++N+
Sbjct: 66 IE---KW----SKDPSGIFALILTPTRELAIQIDEQFAALGANLNL 104
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 69.7 bits (163), Expect = 5e-13
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +3
Query: 363 KKEETPVYRKT-FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCG 539
K E+ R T FED LK L+ + + GF P+ IQ +++P L+G + + A+ G G
Sbjct: 34 KTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTG 93
Query: 540 KTLAYLLPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININV 710
KT A+++P ++ + K IQ +++ P RELALQ +V +T+ + +N+ V
Sbjct: 94 KTAAFVIPSLEKVDTKKSKIQ-------TLILVPTRELALQTSQVCKTLGKHMNVKV 143
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 62.1 bits (144), Expect = 1e-10
Identities = 30/104 (28%), Positives = 60/104 (57%)
Frame = +3
Query: 393 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQ 572
+FE++ LK++L++ + G+ P+A+Q++A+ I G + + A++G GKT + + I+Q
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 573 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSINI 704
+I A++++P RELA+QI V + +N+
Sbjct: 82 -------SIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNV 118
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 60.5 bits (140), Expect = 3e-10
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Frame = +3
Query: 345 IHGNANKKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAIL-NGHNTVIT 521
I N+ K + P E L + GF T +Q + + + N N V+
Sbjct: 25 IRWNSTMKSQQPTLFS--EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQ 82
Query: 522 AETGCGKTLAYLLPIIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSIN 701
A+TG GKTLA+LL + +L+ KP + + +V+++P RELALQI E A+ +
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNS--SKIHSVILSPTRELALQIFEEARKLTYGTG 140
Query: 702 INVTTF---NRRQNEKKNVKPSN 761
I V+ N + E+ ++ N
Sbjct: 141 IRVSYAIGGNSKMREENAIRRGN 163
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 59.3 bits (137), Expect = 7e-10
Identities = 32/104 (30%), Positives = 55/104 (52%)
Frame = +3
Query: 393 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQ 572
TF+D+ LK L++ + GF P+AIQ +A+ IL + + A++G GKT + + ++Q
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 573 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSINI 704
I A+++ P RELA QI +V + +N+
Sbjct: 80 -------KIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 58.4 bits (135), Expect = 1e-09
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Frame = +3
Query: 390 KTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNG--HNTVITAETGCGKTLAYLLP 563
K+FE++ LK L+K + + F P+ IQ KA+P +L+ N + +++G GKT A+ L
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Query: 564 IIQHILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTFNRRQNEKK 743
++ + P P A+ + P+RELA QI +V + + + T F + + K
Sbjct: 174 MLSRVDASVP-------KPQAICLAPSRELARQIMDVVTEMGKYTEVK-TAFGIKDSVPK 225
Query: 744 NVK 752
K
Sbjct: 226 GAK 228
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 58.0 bits (134), Expect = 2e-09
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = +3
Query: 396 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQH 575
F ++ L +K+ F T IQ + +P+ L G + + A+TG GKTLA+++P+I++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 576 ILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQ 692
+ K T + A+VI+P RELA+Q E I +
Sbjct: 101 LYRKKWTSLDGLG---ALVISPTRELAIQTFETLVKIGR 136
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.2 bits (132), Expect = 3e-09
Identities = 34/98 (34%), Positives = 49/98 (50%)
Frame = +3
Query: 393 TFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQ 572
+F+ I + L V GF T +Q A+P L + V+ A TG GKTLAYLLP
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 573 HILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTI 686
+ + T + A+++ P RELA QI V + +
Sbjct: 62 KVTR-RDTDETGLG---ALIVAPTRELATQIFNVTKEL 95
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 55.6 bits (128), Expect = 9e-09
Identities = 34/100 (34%), Positives = 54/100 (54%)
Frame = +3
Query: 411 LKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQHILEWK 590
L ++ + GF+ P IQ+ +P G + + A+TG GKTLA+ +PI++H L
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR-- 186
Query: 591 PTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININV 710
+ ++ A+V+ P RELA QI + + I S NI V
Sbjct: 187 -NVDAKYVQ--ALVVAPTRELAHQICQHFELIKPSPNIRV 223
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 55.2 bits (127), Expect = 1e-08
Identities = 32/103 (31%), Positives = 58/103 (56%)
Frame = +3
Query: 396 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQH 575
F+++ + L + +K+ + PT IQ P +L G + V AETG GKT+A+ +P +Q+
Sbjct: 169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 576 ILEWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSINI 704
+ + + + P +V++P RELA+Q E ++ Q N+
Sbjct: 227 L----NGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNL 265
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 51.2 bits (117), Expect = 2e-07
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Frame = +3
Query: 411 LKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQHILEWK 590
L +L++ +K G+T PT +Q ++P + +G + + A+TG GKT +L PI+ +
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 591 PT---IQEEFNS--------PLAVVITPNRELALQIGE 671
P + ++ P +++ P REL QI E
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 50.0 bits (114), Expect = 4e-07
Identities = 33/106 (31%), Positives = 53/106 (50%)
Frame = +3
Query: 423 LVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQHILEWKPTIQ 602
L + +K T T IQ A+P I + + + A TG GKT+AYL PI+Q + P
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP--- 113
Query: 603 EEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTFNRRQNEK 740
A+++ P REL QI A+ ++ ++ + + + NEK
Sbjct: 114 ---GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELS-KSNEK 155
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 41.5 bits (93), Expect = 1e-04
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Frame = +3
Query: 396 FEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILN----------GHNTVITAETGCGKT 545
F + + LV+ ++ T A+Q +P +L G + ++A TG GKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 546 LAYLLPIIQHIL-EWKPTIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTFN 722
L+Y++PI+Q + P ++ VVI P REL +Q+ + + + V +
Sbjct: 188 LSYVIPIVQCLSHRTVPRLR-------CVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWT 240
Query: 723 RRQN 734
+++
Sbjct: 241 GQKS 244
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 471 QTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQHILE 584
Q A+ + NG + +++ T GK+L Y +PI+Q +LE
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLE 353
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 489 AILNGHNTVITAETGCGKTLAYLLP-IIQHILEWKPTIQEEFNSPLAVVITPNRELALQI 665
++LN N + TG GK+L++L+P +I+ + + L +++ +++ L++
Sbjct: 1202 SLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRV 1261
Query: 666 GE 671
E
Sbjct: 1262 NE 1263
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 489 AILNGHNTVITAETGCGKTLAYLLP-IIQHILEWKPTIQEEFNSPLAVVITPNRELALQI 665
++LN N + TG GK+L++L+P +I+ + + L +++ +++ L++
Sbjct: 1202 SLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRV 1261
Query: 666 GE 671
E
Sbjct: 1262 NE 1263
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -3
Query: 401 FKSLPI-HGCFFFFICIPVY 345
F S PI H FFFF+C+ V+
Sbjct: 147 FSSFPILHFLFFFFLCVCVF 166
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 450 FTLPTAIQT--KAVPAILNGHNTVITAETGCGKTLAYLLPIIQHILEWKPTIQE 605
F LP ++ + V I + NT++ TG GKTL + +I+ LE + IQE
Sbjct: 6 FLLPQLLRKYQQDVYNIASKQNTLLVMRTGAGKTL-LAVKLIKQKLEEQILIQE 58
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/50 (22%), Positives = 21/50 (42%)
Frame = +3
Query: 609 FNSPLAVVITPNRELALQIGEVAQTIAQSININVTTFNRRQNEKKNVKPS 758
FNS + + ++ A ++ +S +N TTF + KP+
Sbjct: 189 FNSSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKPT 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,368
Number of Sequences: 5004
Number of extensions: 64024
Number of successful extensions: 191
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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