Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F19
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       73   5e-15
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.90 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 72.5 bits (170), Expect = 5e-15
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
 Frame = +3

Query: 369 EETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTL 548
           +  P   ++FE  GL++ ++  +K  G+  PT +Q  A+P I+NG + +  A+TG GKT 
Sbjct: 189 DNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTA 248

Query: 549 AYLLPIIQHILEWKP--TIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSIN 701
           A+ +PII  +LE      +   +  P  V+++P REL +QI +  Q +  S+N
Sbjct: 249 AFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQ--QIVKFSLN 299


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 221 IITCKRPEFNHYEGQS-YSKYEGIKLASQGVATQ*IKGRLF 340
           I+T  + EF+HYE Q+ + K  G  L       +   GRLF
Sbjct: 270 ILTLGKKEFSHYEHQNVFVKNSGQWLREYDRELEDFDGRLF 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,276
Number of Sequences: 438
Number of extensions: 4576
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)