Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F18
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   4.7  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   6.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.1  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   8.1  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.1  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 872 GDKSFLPGGLKTIVPDKAXRSG*TGGSCTQPSLERTTYTE 753
           G K  L  G+ T+VPD   RS          S+ +T  T+
Sbjct: 178 GAKDHLSNGVNTVVPDSTFRSTFESAQIPDASVVQTVVTD 217


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 665 RPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSXAPSWAVCTNPPFSPTXAPYPV 832
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 720 RHASRREKGGQV---SGKRQGRNRRAHEGASR 634
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 770  APSWAVCTNPPFSPTXAPYPVLSS*VHPVKTTYXPGS 880
            +PS++  T+P +SPT   Y   S    P   +Y P S
Sbjct: 1589 SPSYSP-TSPSYSPTSPSYSATSPSYSPTSPSYSPTS 1624



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 770  APSWAVCTNPPFSPTXAPYPVLSS*VHPVKTTYXPGS 880
            +PS++  T+P +SPT   Y   S    P   +Y P S
Sbjct: 1603 SPSYSA-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 559 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 687
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,445
Number of Sequences: 5004
Number of extensions: 65391
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)