Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F17
         (873 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.8  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   3.1  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   3.1  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = -3

Query: 472 LLICNELTSALKDFRAILLQLNTIVLQIVTREILCLFSKGLHYISRLLDRQL 317
           L+ C+E TS L  F A+ +      + +  + ++C   +    +  + D+ L
Sbjct: 240 LMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLL 291


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = -3

Query: 472 LLICNELTSALKDFRAILLQLNTIVLQIVTREILCLFSKGLHYISRLLDRQL 317
           L+ C+E TS L  F A+ +      + +  + ++C   +    +  + D+ L
Sbjct: 240 LMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLL 291


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 531 DSSGILITVRSSQEDSNTKKVAY 599
           D+  + I +RS QED++T  V Y
Sbjct: 295 DTMYLFIHIRSRQEDTDTLVVIY 317


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 531 DSSGILITVRSSQEDSNTKKVAY 599
           D+  + I +RS QED++T  V Y
Sbjct: 251 DTMYLFIHIRSRQEDTDTLVVIY 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,658
Number of Sequences: 336
Number of extensions: 4381
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)