Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F17
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.5  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    28   2.0  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    26   6.1  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.1  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   8.1  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
 Frame = +3

Query: 519 YSEEDSSGILITVRSSQEDSNTKKVAYVAILLSWGISISME------NAIHLPYMLERGE 680
           Y E D S +L  +  S +D+N   V   A+LL+  I+ ++         I LP + +R +
Sbjct: 349 YQEGDYSELLRVIAKSLKDANVVVVGVAALLLT-HIAKALRKGFLPYTGIVLPSLFDRFK 407

Query: 681 QRVGTVVKTILQTA 722
           +R  ++V ++L  A
Sbjct: 408 ERKSSLVHSLLDAA 421


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +3

Query: 570 EDSNTKKVAYVAILLSWGISISMENAIHLPYMLERGEQRVGTVVKTILQTAFDCNIK 740
           ED +T++V     L++  + + + NA+     L++ E+ +G + K+I  +   C +K
Sbjct: 210 EDVHTEEVPIKVKLVAPPLYVLLTNALDKSLGLKKLEEAIGAIEKSITASNGTCTVK 266


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 519 YSEEDSSGILITVRSSQEDSNTKKVAYV---AILLSWGISISMENAIHL 656
           YS EDS    ++   S +D N + + Y     I  S+ I+ S+ + +HL
Sbjct: 114 YSNEDSGAASLSDEESVDDENLRGLHYKPNGLIKQSFSITTSLNHKLHL 162


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 245 NFICTNNKFKIKCYN-FNIQV*LVPFSILVFYRAYTI 138
           NF  TNN F++ C+N   +++ L   +I+  +  Y I
Sbjct: 12  NFNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKI 48


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 739 NSLVYSTPTFELWFSFIDSDTSRSMINYTC 828
           N  V++T T +L FSF+  + +   + YTC
Sbjct: 105 NMKVWNTETGQLVFSFVQRNQTGWNLQYTC 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,486
Number of Sequences: 5004
Number of extensions: 68946
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)