Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F17
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848...    28   8.5  

>07_01_1179 +
           11184521-11184536,11184593-11184691,11184790-11184852,
           11185011-11185084,11185187-11185261,11185371-11185514,
           11185629-11185733,11185839-11186276,11187102-11188241,
           11188320-11188493
          Length = 775

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 675 GEQRVGTVVKTILQTAFDCNIKQFSLLNTNF*TLVQFYRQ*YIPVNDQLHLC 830
           GE++   V+ T  +   D  I++F+L   NF   +   R+ +IPV  ++ LC
Sbjct: 322 GERKTNEVIGTECKCVMDM-IQEFNLQEINFLAHMWHIRKRFIPVYFKIDLC 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,325,668
Number of Sequences: 37544
Number of extensions: 365354
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)