Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F17
(873 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF375726-1|ABN46990.1| 465|Homo sapiens parkin 2 protein. 31 7.2
BC022014-1|AAH22014.1| 387|Homo sapiens PARK2 protein protein. 31 7.2
AL445215-4|CAH73685.1| 274|Homo sapiens Parkinson disease (auto... 31 7.2
AL445215-3|CAH73683.1| 316|Homo sapiens Parkinson disease (auto... 31 7.2
AL445215-2|CAH73682.1| 437|Homo sapiens Parkinson disease (auto... 31 7.2
AL445215-1|CAH73681.1| 465|Homo sapiens Parkinson disease (auto... 31 7.2
AL132982-4|CAI23604.1| 274|Homo sapiens Parkinson disease (auto... 31 7.2
AL132982-3|CAI23603.1| 316|Homo sapiens Parkinson disease (auto... 31 7.2
AL132982-2|CAI23602.1| 437|Homo sapiens Parkinson disease (auto... 31 7.2
AL132982-1|CAI23601.1| 465|Homo sapiens Parkinson disease (auto... 31 7.2
AL035697-5|CAI21388.1| 274|Homo sapiens Parkinson disease (auto... 31 7.2
AL035697-4|CAI21387.1| 316|Homo sapiens Parkinson disease (auto... 31 7.2
AL035697-3|CAI21386.1| 437|Homo sapiens Parkinson disease (auto... 31 7.2
AL035697-2|CAI21385.1| 465|Homo sapiens Parkinson disease (auto... 31 7.2
AL035697-1|CAI21384.1| 368|Homo sapiens Parkinson disease (auto... 31 7.2
AF381284-1|AAM21459.1| 203|Homo sapiens parkin isoform protein. 31 7.2
AF381283-1|AAM21458.1| 218|Homo sapiens parkin isoform protein. 31 7.2
AF381282-1|AAM21457.1| 274|Homo sapiens parkin isoform protein. 31 7.2
AB245403-1|BAF43729.1| 465|Homo sapiens parkin 2 protein. 31 7.2
AB009973-1|BAA25751.1| 465|Homo sapiens Parkin protein. 31 7.2
>EF375726-1|ABN46990.1| 465|Homo sapiens parkin 2 protein.
Length = 465
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
>BC022014-1|AAH22014.1| 387|Homo sapiens PARK2 protein protein.
Length = 387
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
>AL445215-4|CAH73685.1| 274|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)ing 1 protein.
Length = 274
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 58 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 99
>AL445215-3|CAH73683.1| 316|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)core domain 3 (WFDC3)
protein.
Length = 316
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 100 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 141
>AL445215-2|CAH73682.1| 437|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)eta protein.
Length = 437
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 221 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 262
>AL445215-1|CAH73681.1| 465|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)ier family 9
(sodium\/hydrogen protein.
Length = 465
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
>AL132982-4|CAI23604.1| 274|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)) protein.
Length = 274
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 58 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 99
>AL132982-3|CAI23603.1| 316|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)visiae) protein.
Length = 316
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 100 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 141
>AL132982-2|CAI23602.1| 437|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)rate protein.
Length = 437
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 221 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 262
>AL132982-1|CAI23601.1| 465|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)lo2, SUR4/Elo3,
yeast)-like 4 protein.
Length = 465
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
>AL035697-5|CAI21388.1| 274|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)otein 1-like 1 protein.
Length = 274
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 58 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 99
>AL035697-4|CAI21387.1| 316|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)r 1 protein.
Length = 316
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 100 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 141
>AL035697-3|CAI21386.1| 437|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)r 1 protein.
Length = 437
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 221 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 262
>AL035697-2|CAI21385.1| 465|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)adenine nucleotide
translocato protein.
Length = 465
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
>AL035697-1|CAI21384.1| 368|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)family, member 1 protein.
Length = 368
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
>AF381284-1|AAM21459.1| 203|Homo sapiens parkin isoform protein.
Length = 203
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 58 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 99
>AF381283-1|AAM21458.1| 218|Homo sapiens parkin isoform protein.
Length = 218
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 170 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 211
>AF381282-1|AAM21457.1| 274|Homo sapiens parkin isoform protein.
Length = 274
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 58 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 99
>AB245403-1|BAF43729.1| 465|Homo sapiens parkin 2 protein.
Length = 465
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
>AB009973-1|BAA25751.1| 465|Homo sapiens Parkin protein.
Length = 465
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 IVLQIVTREILCLFSKGLHYISRLLDRQ-LHD-DLCYRLPLV 284
+V Q +R ++CL L+ ++RL DRQ +HD L Y LP V
Sbjct: 249 LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCV 290
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,791,555
Number of Sequences: 237096
Number of extensions: 2228722
Number of successful extensions: 3136
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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