Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F17
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    29   0.074
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    28   0.098
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    28   0.098
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    28   0.098
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    28   0.098
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    28   0.098
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.91 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.5  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 28.7 bits (61), Expect = 0.074
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 230 NNKFKIKCYNFNIQV*LVPFSILVFYRAY--TILSTWIKSSY*ISNFRNV 87
           NN +K  CYN N  +  +P  + V+Y  +    + +WI     I  FR++
Sbjct: 96  NNNYKQLCYNIN-HIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHI 144


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 230 NNKFKIKCYNFNIQV*LVPFSILVFYRAY--TILSTWIKSSY*ISNFRNV 87
           NN +K  CYN N  +  +P  + V+Y  +    + +WI     I  FR++
Sbjct: 96  NNNYKQLCYNIN-YIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHI 144


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 230 NNKFKIKCYNFNIQV*LVPFSILVFYRAY--TILSTWIKSSY*ISNFRNV 87
           NN +K  CYN N  +  +P  + V+Y  +    + +WI     I  FR++
Sbjct: 96  NNNYKQLCYNIN-YIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHI 144


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 230 NNKFKIKCYNFNIQV*LVPFSILVFYRAY--TILSTWIKSSY*ISNFRNV 87
           NN +K  CYN N  +  +P  + V+Y  +    + +WI     I  FR++
Sbjct: 96  NNNYKQLCYNIN-YIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHI 144


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 230 NNKFKIKCYNFNIQV*LVPFSILVFYRAY--TILSTWIKSSY*ISNFRNV 87
           NN +K  CYN N  +  +P  + V+Y  +    + +WI     I  FR++
Sbjct: 96  NNNYKQLCYNIN-YIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHI 144


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 230 NNKFKIKCYNFNIQV*LVPFSILVFYRAY--TILSTWIKSSY*ISNFRNV 87
           NN +K  CYN N  +  +P  + V+Y  +    + +WI     I  FR++
Sbjct: 96  NNNYKQLCYNIN-YIEQIPVPVPVYYGNFPPRPMGSWISIQEQIPRFRHI 144


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 12/60 (20%), Positives = 27/60 (45%)
 Frame = +3

Query: 318 NWRSNSLDI**RPLENKQSISLVTICNTMVLS*SSMALKSFRALVSSLQMSNTAKYTVVL 497
           N++SN   +  + L+ +  + +   CN   L    + L +  +    L +SN  K+  ++
Sbjct: 17  NYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTII 76


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 389 CNKGDTLFIFQRPSLY 342
           C  G    IFQ PSLY
Sbjct: 493 CTAGTLGIIFQAPSLY 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,466
Number of Sequences: 438
Number of extensions: 4857
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)