Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F16
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    28   0.14 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.1  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   9.4  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   9.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 750 PPXKXPPPPPPXNXNP 797
           PP   PPPPPP +  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 868 PPXXXPPPPP 897
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +2

Query: 815 PGXGXPPPPXKKXHXPXXPPXXPPPXPLXXXXAPXXGXXPXXP 943
           P  G P P       P  P    PP P      P  G  P  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNP---SQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 705 PKTPXRPXKEXXXXXPPXKXPPPPPPXNXNP 797
           P+ P R         PP   PP  PP + NP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP-SQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 765  PPPPPPXN 788
            PPPPPP N
Sbjct: 1859 PPPPPPRN 1866


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +1

Query: 685 PPXSXXRQKPPXGPXKXPXXXXPLXNXPPRPP 780
           PP    R +    P   P    P+    PRPP
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRPIYIPQPRPP 56


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +1

Query: 685 PPXSXXRQKPPXGPXKXPXXXXPLXNXPPRPP 780
           PP    R +    P   P    P+    PRPP
Sbjct: 24  PPTRPTRLRREAKPEAEPGNNRPVYIPQPRPP 55


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +1

Query: 685 PPXSXXRQKPPXGPXKXPXXXXPLXNXPPRPP 780
           PP    R +    P   P    P+    PRPP
Sbjct: 25  PPTRPTRLRREAEPEAEPGNNRPVYIPQPRPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.143    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,712
Number of Sequences: 438
Number of extensions: 6084
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)