Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F15
         (915 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E45ED1 Cluster: PREDICTED: similar to LOC564406 ...    42   0.029
UniRef50_Q71UI9 Cluster: Histone H2AV; n=156; Eukaryota|Rep: His...    42   0.029
UniRef50_A0DGQ5 Cluster: Histone H2A; n=11; Eukaryota|Rep: Histo...    38   0.36 

>UniRef50_UPI0000E45ED1 Cluster: PREDICTED: similar to LOC564406
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to LOC564406 protein -
           Strongylocentrotus purpuratus
          Length = 338

 Score = 41.5 bits (93), Expect = 0.029
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 466 KQLIAGGGVIPHIHKSLIGKE 528
           K  IAGGGVIPHIHKSLIGK+
Sbjct: 312 KATIAGGGVIPHIHKSLIGKK 332


>UniRef50_Q71UI9 Cluster: Histone H2AV; n=156; Eukaryota|Rep:
           Histone H2AV - Homo sapiens (Human)
          Length = 128

 Score = 41.5 bits (93), Expect = 0.029
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 466 KQLIAGGGVIPHIHKSLIGKE 528
           K  IAGGGVIPHIHKSLIGK+
Sbjct: 102 KATIAGGGVIPHIHKSLIGKK 122


>UniRef50_A0DGQ5 Cluster: Histone H2A; n=11; Eukaryota|Rep: Histone
           H2A - Paramecium tetraurelia
          Length = 183

 Score = 37.9 bits (84), Expect = 0.36
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 475 IAGGGVIPHIHKSLIGKE 528
           IAGGGVIPHIHK+L GK+
Sbjct: 157 IAGGGVIPHIHKALFGKQ 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,907,645
Number of Sequences: 1657284
Number of extensions: 12329136
Number of successful extensions: 18487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18483
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)